PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g19310

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Dof

Protein Properties

Length: 200aa MW: 21689.2 Da PI: 9.4357

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g19310	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	9.7e-40	23	83	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s Tp3g19310 23 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNAKRS 83 57899****************************************************8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-33	25	81	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-24	27	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MQDPAVYYQS MMAKQQQQQQ FPEQEQLKCP RCDSPNTKFC YYNNYNLSQP RHFCKSCRRY 60 WTKGGALRNV PVGGGSRKNA KRSTSSSSTC PSNNKKTKNP DPGHNSQNGT NPDTDPTRML 120 YGFPIGDQDV KGMEMGGGGS FSSLLASNMQ LGLGGIMVDG SGWDPGMGLG MGLRRSEAGN 180 GGGGGGNPWT DLAMNRVEKN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g19310

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189344	1e-117	AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406292.1	1e-113	dof zinc finger protein DOF3.1
Swissprot	Q94AR6	6e-88	DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBL	V4LBD4	1e-112	V4LBD4_EUTSA; Uncharacterized protein
STRING	XP_006406292.1	1e-113	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	8e-70	DOF zinc finger protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]