PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g17880

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 285aa MW: 31920.6 Da PI: 8.627

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g17880	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	6	55	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RR+++N+ f eL +l ++ +K++Ka+iL+ +v+ +k+L Tp3g17880 6 RKTQKAGREKLRREKLNEHFVELGNVLDPD----RPKNDKATILTDTVQLLKDL 55 5677788*****************9997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-13	5	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-12	5	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.932	5	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-7	6	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.35E-7	6	59	No hit	No description
SMART	SM00353	1.8E-6	11	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDVSARKTQK AGREKLRREK LNEHFVELGN VLDPDRPKND KATILTDTVQ LLKDLTSEVN 60 KLKSEYTSLT DESRELTQEK NDLREEKTSL KSDIENLNLQ YQQRLRSMSP WGAAMDHTVM 120 MAPPPSFPYP MPMAMPPGSI PMHPSMPSYT YFGNQNPSMM PAPCPTYMPY MPPNTVVEQQ 180 SVHIPQNPGN RSRETRTKVS RESRSEKAED SNDVATQLEL KTPGSTSDKD TSQRPEKTKR 240 SKRNSSNNNS IEESSHSSKC SSSPSVRDNS SSSSVAGGQK PDDAK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g17880

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317507	0.0	AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBank	AY065107	0.0	AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBank	AY081703	0.0	AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001326099.1	1e-172	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Refseq	NP_188620.1	1e-172	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9LT23	1e-172	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1I9LN90	1e-170	A0A1I9LN90_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	AT3G19860.2	1e-170	(Arabidopsis thaliana)
STRING	XP_006406448.1	1e-170	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-154	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]