PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g17550

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 266aa MW: 28605.7 Da PI: 5.9579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g17550	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	154	194	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq Tp3g17550 154 KVRKERLGERISALQQLVSPF-----GKTDAASVLHEAMGYIKFLQ 194 567789999*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.788	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-11	151	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-7	152	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.81E-5	154	198	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGDFAEDQDD GAMVEAAGAT SFSELLMLSD GVLSSSDHHR HDNSGDGGED SFGFVFSGST 60 NGSRMLCFSG DCQNDDESLF LEPSLLSGVS VSDPSCTINT SKNSNDVFTD DKSTKALNKK 120 KRTGSVNGRN MDDNRKSSKK CNRNQDKSSV GITKVRKERL GERISALQQL VSPFGKTDAA 180 SVLHEAMGYI KFLQDQIQVL CSPYLINYSL DGGVVTGDVR PGKKVRDLRS RGLCLVPVSS 240 TVHVESSNGA DFWSPATMGH TKSPSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g17550

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145780.1	1e-157	PREDICTED: transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-140	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A078I5R4	1e-155	A0A078I5R4_BRANA; BnaA05g20570D protein
TrEMBL	A0A397ZLA2	1e-155	A0A397ZLA2_BRACM; Uncharacterized protein
TrEMBL	M4E0Y1	1e-155	M4E0Y1_BRARP; Uncharacterized protein
STRING	Bra022428.1-P	1e-156	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-142	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]