PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g17420
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 393aa    MW: 44052.2 Da    PI: 7.6733
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g17420genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.64.9e-09108133127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+ C  f + GtC+ G+ C+FaHg+
  Tp3g17420 108 YKTRMCVKFKA-GTCRNGELCNFAHGM 133
                9**********.*************95 PP
2zf-CCCH19.51.7e-061962101125
                GTS.--TTTTT-SS-S CS
    zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                  G +C+yGdrC+F+H
  Tp3g17420 196 F-GeECPYGDRCNFIH 210
                5.449*********** PP
3zf-CCCH31.72.6e-10277302127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt++C+ f    +C++Gd+C+FaHg+
  Tp3g17420 277 WKTRICMKFEN-NQCPFGDKCHFAHGQ 302
                8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-14105140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-8106138IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-5107133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709107134IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5108133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036185212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6185211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455185213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-8187211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-8274306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-13275305IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5276302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047276303IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8277302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGSW NQTQMIDSMV NPMNNENVDL HSQPESLSQS QSQPPHQLQP  60
SLKRPRLVDD NVFNPASYFP PTSNNNNSWM VPSLNPPPVN KGTANIFYKT RMCVKFKAGT  120
CRNGELCNFA HGMEDLRQPP SNWQEIVGPP VQDRERERER ERERERPSSV SAGNNNNWED  180
DQKIILRMKL CRKFCFGEEC PYGDRCNFIH EDLSKFREES GKQRESSAIS VGTTTAADAP  240
SVETGTTASH QIEVNRRGGI PVPAPMNNGG GVKTVYWKTR ICMKFENNQC PFGDKCHFAH  300
GQAELLHHSI GRVDGEAVNA VASVSKQTVV PANEAFAMKP TAQVTADSSG LNDEGRRKKC  360
LLKWSDSKKI NRIYGDWIDD LPVGQKSTKP VES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155165RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g17420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535210.0AK353521.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-48-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406508.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLE4MYC40.0E4MYC4_EUTHA; mRNA, clone: RTFL01-48-H16
TrEMBLV4NNA60.0V4NNA6_EUTSA; Uncharacterized protein
STRINGXP_006406508.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein