PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g16710
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 649aa    MW: 72459.7 Da    PI: 9.6556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g16710genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.6e-06223242525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C+ffa+ G+C+ G  C+F+H
  Tp3g16710 223 PCKFFAA-GICRNGKHCRFSH 242
                7**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.145218245IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-4218244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6221243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MSGSGRKHVS KWDSKEDTHQ HNHPSVDAKS GSYYRDKEPE PVRFNAESNA SRRSAAPEDQ  60
HPGEARSRSR VSQNDDNSYY SAQDETWQQI FRRSGSRSYS RSRSRSRSPV YRTRQDAVSY  120
DRKKTRTRDS PLASREFNKR GGHQSSDYGW DDKTRKPREM RYHADDFKEE ATMKGVMSSD  180
YDTDFPEDHP RLRRHRSELT GEKETQRRDG GVEGGFRRSS SIPCKFFAAG ICRNGKHCRF  240
SHHGADGKQP QDNKFYRQDN NNHSGHNRWN DVERLDNGKF SGIEVSHASK GKGSSWIDDM  300
EMSPDWNYGA HNLKNPVKEE PGVGIVGQSS QSRAVKDNLV TNYDQRSSGM YSYGDKPMVE  360
KPIADSHQNY NNAVNIAPVQ AFNQNHYVLP YQSSLASGGS QQVIAVAADF SVGSNLSNPE  420
SGKVYQDNHH SVVEEAVPAQ NTVTREQIDQ ISSISATIAQ FLANGQPIPQ LTQALQVPLH  480
SESSRAVQPN QASQSNSVSN NPNPLWGLGM SIGADGVPTV TASQVSNVVG IQELALNPKV  540
SDENGDKKID EASKEEGENK KGKDPKGMRA FKFALVEIVK ELLKPAWKEG KMNKDGYKNI  600
VKKVVEKVTG SIQSGNVPQT QEKIDHYLSA SKPKLTKLVQ AYISKVKKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g16710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885268.10.0zinc finger CCCH domain-containing protein 38
SwissprotQ9LIH50.0C3H38_ARATH; Zinc finger CCCH domain-containing protein 38
TrEMBLD7L9320.0D7L932_ARALL; Uncharacterized protein
STRINGBostr.19424s0798.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-19C3H family protein