PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g11130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 32065.9 Da PI: 8.8333 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 7.8e-52 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhP+d+elv++yL k+ ++ ++ v+ +vd++k+ePwd+p+++k + +ewyf+s++d+kyatg+r+nrat++gyWkatgkd+++ + +g+lv Tp3g11130 18 LPPGFRFHPRDDELVCDYLLKRSVRSLHQP-IVLIDVDLNKCEPWDIPQTAKVGGREWYFYSQKDRKYATGQRTNRATATGYWKATGKDRAIQR-NGSLV 115 79****************988765555444.5899*************999999**************************************99.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g++ktLvfy+grapkg+ktdWvmhe+rl Tp3g11130 116 GMRKTLVFYRGRAPKGRKTDWVMHEFRL 143 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-59 | 11 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.318 | 18 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEVKEENKGS ISIVEANLPP GFRFHPRDDE LVCDYLLKRS VRSLHQPIVL IDVDLNKCEP 60 WDIPQTAKVG GREWYFYSQK DRKYATGQRT NRATATGYWK ATGKDRAIQR NGSLVGMRKT 120 LVFYRGRAPK GRKTDWVMHE FRLQGTCLHH SPTSLKEEWV LCRVFHKNSN EVDRDNNMRR 180 CSDETASALC DSYINFDHHH IINQQVHCFS NLSHNQTNQS GLVSKNPNPL STPSSDQMVL 240 RALLSQLTKS TKESHSYGEG SSESQLTDVG IQRHDSWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-51 | 14 | 169 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g11130 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407275.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-131 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1J3GCU0 | 0.0 | A0A1J3GCU0_NOCCA; NAC domain-containing protein 21/22 | ||||
STRING | XP_006407275.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-168 | NAC family protein |