PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g09350
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 325aa    MW: 36521.5 Da    PI: 4.6533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g09350genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1977127155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                + ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+k+++g
  Tp3g09350  77 CSFRGVRQRI-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAASAYDEAAKAMYG 127
                579****998.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1477127IPR001471AP2/ERF domain
CDDcd000187.60E-3277135No hitNo description
SMARTSM003803.2E-3778141IPR001471AP2/ERF domain
PROSITE profilePS5103222.15578135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3178136IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2179136IPR016177DNA-binding domain
PRINTSPR003678.2E-107990IPR001471AP2/ERF domain
PRINTSPR003678.2E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTVYEQTGAD TTSKKRKSKA RADGTTVADR LKKWKEYNKI VEASSIKEGE KPRRKVPAKG  60
SKKGCMKGKG GPENSHCSFR GVRQRIWGKW VAEIREPNRG SRLWLGTFPT AEEAASAYDE  120
AAKAMYGPLA RLNFPQCVGF DIPSTSNQSE VCTVEDKAVL PGDVCVKQED ADSESRPVSQ  180
ILDVKEGYSD IRWDNFAGER RDANSRLNSD LLNEFDEDYW SRGPREKEKP KEEDEKVIQP  240
QPEPGMLTVS DYGWPYNMDI EPGLWDPNEV FDVDELLGDM DEGMITGPGP WQGQNQVHPG  300
GYDSQPLQLE PHDGHEFFDL SSLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1767136373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00346DAPTransfer from AT3G11020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g09350
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6533770.0EF653377.1 Thellungiella halophila DREB2B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407478.11e-145dehydration-responsive element-binding protein 2B
SwissprotO821331e-131DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLB3SQD51e-144B3SQD5_EUTHA; DREB2B
TrEMBLV4NQN91e-144V4NQN9_EUTSA; Uncharacterized protein
STRINGXP_006407478.11e-145(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.11e-123DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]