PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g08900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 182aa MW: 20984.7 Da PI: 7.7332 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 90 | 135 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eE+ ++ ++ ++G+g+Wk I+r+ +Rt+ q+ s+ qkyl Tp3g08900 90 PWTEEEHRRFQEGLDKFGKGDWKNISRMSVRTRTPTQVASHAQKYL 135 8********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 14 | 2 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-11 | 81 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.964 | 83 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-18 | 85 | 140 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-16 | 86 | 137 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.4E-11 | 87 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 90 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.10E-11 | 90 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MVSMHWSKHD DKRFESALVL FTEDYPNRFA TITDHLQIPV RDVIQYYEAL VHDIDLIKSD 60 QVAVNDYPDC SGGISSKTKH VKKDQKRGTP WTEEEHRRFQ EGLDKFGKGD WKNISRMSVR 120 TRTPTQVASH AQKYLLRLES KIKKCSSIHD ISLVPDVVDN VNVPRSDLDS TMGQPQFGQQ 180 MP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 86 | VKKDQKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g08900 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122731.1 | 4e-76 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_013730893.1 | 3e-76 | transcription factor DIVARICATA-like | ||||
TrEMBL | M4EZ87 | 9e-75 | M4EZ87_BRARP; Uncharacterized protein | ||||
STRING | Bra034130.1-P | 1e-75 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09450.1 | 1e-48 | MYB_related family protein |