PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G09450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 23111.8 Da PI: 7.5564 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.7e-14 | 92 | 136 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++++ +++G+g+Wk I+r+ k Rt q+ s+ qky AT4G09450.1 92 PWSEEEQRLFLEGLNKFGKGDWKNISRYCVKSRTSTQVASHAQKY 136 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.4 | 3 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.088 | 84 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.73E-17 | 87 | 142 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-16 | 88 | 140 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-9 | 89 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 92 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.46E-11 | 92 | 137 | No hit | No description |
Pfam | PF00249 | 4.7E-11 | 92 | 136 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAAFPQWTRV DDKRFELALL QIPEGSPNFI ENIAYYLQKP VKEVEYYYCA LVHDIERIES 60 GKYVLPKYPE DDYVKLTEAG ESKGNGKKTG IPWSEEEQRL FLEGLNKFGK GDWKNISRYC 120 VKSRTSTQVA SHAQKYFARQ KQESTNTKRP SIHDMTLGVA VNVPGSNLES TGQQPHFGDQ 180 IPSNQYYPSQ ENFRGFDQRW |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G09450 | |||||
AtGenExpress | AT4G09450 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G09450.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G09450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY122911 | 0.0 | AY122911.1 Arabidopsis thaliana unknown protein (At4g09450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_192683.1 | 1e-150 | Duplicated homeodomain-like superfamily protein | ||||
Swissprot | Q9FNN6 | 2e-31 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | Q9M0P7 | 1e-149 | Q9M0P7_ARATH; Duplicated homeodomain-like superfamily protein | ||||
STRING | AT4G09450.1 | 1e-149 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14731 | 7 | 19 |
Link Out ? help Back to Top | |
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Phytozome | AT4G09450.1 |
Entrez Gene | 826528 |
iHOP | AT4G09450 |
wikigenes | AT4G09450 |
Publications ? help Back to Top | |||
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