PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g06990
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 336aa    MW: 37873.1 Da    PI: 7.9258
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g06990genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-073454526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                C f+++ G+C yG+rC++ H+
  Tp3g06990 34 VCTFYQK-GICLYGSRCRYEHV 54
               5******.***********997 PP
2zf-CCCH20.86.9e-07118140326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +++C+ fa+ G C++G++C+ +Hg
  Tp3g06990 118 YPICS-FAAAGDCPRGNQCPHMHG 140
                68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9112956IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-53153IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-43454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0013453IPR000571Zinc finger, CCCH-type
SMARTSM003560.028115141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.014115142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.1E-10165243IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.24E-13173248No hitNo description
CDDcd001628.45E-4183243No hitNo description
PROSITE profilePS5008912.238184242IPR001841Zinc finger, RING-type
PfamPF000971.0E-7184241IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001849.3E-8184241IPR001841Zinc finger, RING-type
PROSITE patternPS005180208217IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.685271300IPR000571Zinc finger, CCCH-type
SMARTSM003560.39271299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEYSHDSKDP ANNVCTFYQK GICLYGSRCR YEHVRTSQPQ  60
ILSASNVPRS PLCSDSQPQS FSTAYSFLLT PSMNPQQKRD GDDGGKSANV CYIHPREYPI  120
CSFAAAGDCP RGNQCPHMHG DICSTCGKKC LHPFRPEERE EHTKECEKKQ KHIEALKKSQ  180
DIECSVCLDR VLSKATPGER KFGLLTECHH PFCIQCIRNW RSSAPVSGMD VNGTLRACPI  240
CRKLSYFVVP SVVWYSTPEE KKEIIDIYKA KLRSIDCKHF NFGNGNCPFG GSCFYKHAYS  300
DGHLEEVALR HLGSQEGETI IADSFRLSEF LGRLQI
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g06990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
GenBankBT0009880.0BT000988.1 Arabidopsis thaliana clone U18319 unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407766.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A1J3JWV40.0A0A1J3JWV4_NOCCA; E3 ubiquitin-protein ligase makorin
STRINGXP_006407766.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.20.0C3H family protein