PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g05330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 453aa    MW: 47852.5 Da    PI: 7.9224
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g05330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-125479227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C +++rtG C yG+rC+F+H++
  Tp3g05330 54 DEPDCIYYLRTGVCGYGSRCRFNHPR 79
               6899********************96 PP
2zf-CCCH37.25e-12101125327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C++f+rtGtCk+G++Ck++H++
  Tp3g05330 101 HPVCQHFMRTGTCKFGASCKYHHPR 125
                789********************96 PP
3zf-CCCH39.49.8e-13146170226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++++rtG+Ck+G +C+F+H+
  Tp3g05330 146 GEKECSYYMRTGQCKFGLTCRFNHP 170
                7899********************9 PP
4zf-CCCH39.96.8e-13298322226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++f+rtG Ck+G++C+++H+
  Tp3g05330 298 DQPECQYFMRTGDCKFGSSCRYHHP 322
                689*********************9 PP
5zf-CCCH32.61.3e-10344369227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                + + C +fa+ G+Ck+G+ CkF H++
  Tp3g05330 344 GVAQCTHFAQHGICKFGPACKFDHSM 369
                6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2395280IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-45279IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-105479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55879IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61998126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-699125IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5103125IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5146171IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4150169IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155296324IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10298322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6299325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5302322IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31342370IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8344368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5345370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPPLEW TSQGGETGVE ASMWRLGLSG GGAGGGESYP ERPDEPDCIY  60
YLRTGVCGYG SRCRFNHPRD RGAVIGGVRG GDGALPERMG HPVCQHFMRT GTCKFGASCK  120
YHHPRQGGGS VAPVSLSYLG YPLRPGEKEC SYYMRTGQCK FGLTCRFNHP VPLAPQQQQQ  180
PQAQLQTIYP TLQSQSVPSS QHYGLVLARP SLLPGSYLPS HYGPPMVLPP GMVTYPGWNP  240
YQASLTAMPS PGTQPSIGPS SVYGIAPLSP SATAYTGTYQ SGPSSTTSKE QSFPQRPDQP  300
ECQYFMRTGD CKFGSSCRYH HPLDAVQPKT GVLLSSIGLP LRPGVAQCTH FAQHGICKFG  360
PACKFDHSMG SSLSYSPSAS SLTDMPVAPY PIGSSSLSGA SAPISSSNEP TTEAVTAAGS  420
SPMVSGVSRQ EPAETSGDSA SVSGSIEAKT SPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g05330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407949.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D60.0V4M3D6_EUTSA; Uncharacterized protein
STRINGXP_006407949.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]