PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g04740

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 295aa MW: 34204.5 Da PI: 5.0579

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g04740	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.8	3.2e-09	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i++++ r+ tf R+ ++K L +LCd++++ +i+ + Tp3g04740 11 ISDDTARKATFNHRKRELMKRLDDLKILCDVDACAVIYNP 50 99********************************999965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.9E-11	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.666	1	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-18	1	85	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.09E-22	2	85	No hit	No description
Pfam	PF00319	9.3E-12	11	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAKKKLNLTY ISDDTARKAT FNHRKRELMK RLDDLKILCD VDACAVIYNP FNSNPEVWPS 60 NLEVYNILQK FEMLTEMDKT YKSVNHKEFL IQNIAKVEKQ NKKLIADNNE KFMRELMFAC 120 LGQNMGDLHM NDNIRLNLCE FIDQYLKNLL NHENVTLNNP HFEIGESSSM AMVVDMAPTD 180 MADAGSSSFW NASIFNSTQL TNESHAPILN SHQLTNEMQP MISSNQGSEH VGSLASSLLP 240 ISDHEVNTPV INQDEVYYPN QNQNQNQQDW YVEEMMKHSE QTGFPWMEEN HHYKF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g04740

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_180438.2	1e-114	AGAMOUS-like 46
TrEMBL	A0A178VYD3	1e-113	A0A178VYD3_ARATH; AGL46
TrEMBL	F4IIT6	1e-113	F4IIT6_ARATH; AGAMOUS-like 46
TrEMBL	Q7XJ97	1e-113	Q7XJ97_ARATH; Uncharacterized protein
STRING	AT2G28700.1	1e-114	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28700.1	1e-112	AGAMOUS-like 46