PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g03300

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 369aa MW: 41304.3 Da PI: 6.1211

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g03300	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.6	1.2e-32	171	225	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ Tp3g03300 171 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 225 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.209	168	228	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-17	169	225	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.5E-30	170	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-23	171	225	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-10	173	224	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-23	259	306	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MNNPVPCQVF PLVSGSSSSG FCNGMYVSAH ERNSSQTRQS VSHVSVETQS LPVINQPQEQ 60 KDMSWSEDQL QGFFDFPVPD PQAENSRAMV VHSKSEWPDW ANQMISVDDG LEPNWSELLG 120 DPNVLNQDSK IPTPSSDIAR QEIVVNNKHQ LDPLMEQPNA KSSPASSMTS KQRMRWTPEL 180 HEAFVEAINQ LGGSERATPK AVLKLINSPG LTIYHVKSHL QKYRTARYKP ELSEDTEKPP 240 VKNLKTIEDI KSLDLKTSIE ITEALRLQMD VQKRLHEQLE VQRSLQLQIE EQGRYLQMMI 300 EKQQKMQEKK KGSSCSLSVP EADTSAPSPN LSQAINSQPS ITQKLQSGSS TLDQSGSASG 360 TTRKRVRED

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MNNPVPCQVF PLVSGSSSSG FCNGMYVSAH ERNSSQTRQS VSHVSVETQS LPVINQPQEQ  60
KDMSWSEDQL QGFFDFPVPD PQAENSRAMV VHSKSEWPDW ANQMISVDDG LEPNWSELLG  120
DPNVLNQDSK IPTPSSDIAR QEIVVNNKHQ LDPLMEQPNA KSSPASSMTS KQRMRWTPEL  180
HEAFVEAINQ LGGSERATPK AVLKLINSPG LTIYHVKSHL QKYRTARYKP ELSEDTEKPP  240
VKNLKTIEDI KSLDLKTSIE ITEALRLQMD VQKRLHEQLE VQRSLQLQIE EQGRYLQMMI  300
EKQQKMQEKK KGSSCSLSVP EADTSAPSPN LSQAINSQPS ITQKLQSGSS TLDQSGSASG  360
TTRKRVRED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-28	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-28	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-28	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-28	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-28	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-28	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-28	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-28	171	229	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g03300

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118630	0.0	AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
GenBank	BT005352	0.0	BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014879.1	0.0	myb family transcription factor PHL13 isoform X2
Swissprot	F4J3P7	0.0	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	V4NSJ6	0.0	V4NSJ6_EUTSA; Uncharacterized protein
STRING	XP_006408187.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]