PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g03040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40835.6 Da PI: 7.0894 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.3e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 lppGfrFhPtdeel+ +yL+kkv++ +++l ++i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + + Tp3g03040 10 LPPGFRFHPTDEELILHYLRKKVSSLPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPnregF 108 79****************************.89***************988899**************************************99855554 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl Tp3g03040 109 NENIGIKKALVFYRGKPPKGVKTNWIMHEYRL 140 556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-61 | 7 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.945 | 10 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSLPVPLS IIADVDIYKS DPWDLPAKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNREGFNE NIGIKKALVF 120 YRGKPPKGVK TNWIMHEYRL AESLSPKRLA HSRSGSQVNH LGDTSLKSKE YSMRLDDWVL 180 CRIYKKSHAS LSSTDVASAT SDQEQEENDN EPFVVSENIL PNLANNQTLK RQKSSFSNVL 240 DATDLKFLTN FLNETPENQT EPEFSFMFGN FSNPDIYGNP YLDQKLPQLS SPTSETSVIG 300 NKRERLDFAE ETFNTSKNTI NNFSYNNSID HLDHSMVQQS SFLNHEFLIN PHRQYQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 5e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 5e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 5e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 5e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 5e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 5e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 5e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-70 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-70 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g03040 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974760 | 0.0 | KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408226.1 | 0.0 | NAC transcription factor 47 | ||||
Swissprot | Q84TD6 | 0.0 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | V4M0Q7 | 0.0 | V4M0Q7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408226.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 0.0 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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