PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g02240
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 479aa    MW: 55388.4 Da    PI: 5.551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g02240genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-5461331128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v   +++
  Tp3g02240   6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW-RDR 103
                79****************************.99***************6345667999*************************************9.889 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                ++g+kktLv+y+grap+g +t Wvmheyrl
  Tp3g02240 104 AIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
                9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-624157IPR003441NAC domain
PROSITE profilePS5100561.0256157IPR003441NAC domain
PfamPF023657.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090602Biological Processsieve element enucleation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAPVALPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHAMSNVSG  180
NSSFEACSDL EISSTTHQVH NAFQPRFGNG RFHSNATSNE DWSQSYGSSY APFPTPYKVN  240
NEIECSMLQH NISLPPLRVE NSAVSDCDFF ASRTHNNNHD VLGDFTFAAS NCNHYNSVGD  300
QVIHIGNYDE PPLIMSNHHM NQGYIEEQKT ITSLDDNYQD LGFNGDNTNN NIDIDDFFSF  360
DIYNEENVNR VECNEEDVNN TNETLDSSGF EVVEEEIRFN NQMLISTYQT TKILYHQVVP  420
SHTLKVHINS INHNVEERTL FIEEDKDSWL QRAEKITKTK LTLVSLMAQQ YYKYLAIFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-55115712165NO APICAL MERISTEM PROTEIN
1ut4_B8e-55115712165NO APICAL MERISTEM PROTEIN
1ut7_A8e-55115712165NO APICAL MERISTEM PROTEIN
1ut7_B8e-55115712165NO APICAL MERISTEM PROTEIN
3swm_A9e-55115715168NAC domain-containing protein 19
3swm_B9e-55115715168NAC domain-containing protein 19
3swm_C9e-55115715168NAC domain-containing protein 19
3swm_D9e-55115715168NAC domain-containing protein 19
3swp_A9e-55115715168NAC domain-containing protein 19
3swp_B9e-55115715168NAC domain-containing protein 19
3swp_C9e-55115715168NAC domain-containing protein 19
3swp_D9e-55115715168NAC domain-containing protein 19
4dul_A8e-55115712165NAC domain-containing protein 19
4dul_B8e-55115712165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00329DAPTransfer from AT3G03200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g02240
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0304610.0BT030461.1 Arabidopsis thaliana At3g03200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119137.10.0PREDICTED: NAC domain-containing protein 45
SwissprotA4VCM00.0NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A398AZS70.0A0A398AZS7_BRACM; Uncharacterized protein
STRINGBra021366.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.10.0NAC domain containing protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]