PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g02050
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 463aa    MW: 51375 Da    PI: 4.842
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g02050genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.6e-37271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
     Tp3g02050  27 FLSKTYDMVDDPSTNDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLKNIV 114
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Tp3g02050 115 RRKP 118
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3923116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5923116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGSICESVPT ANSSSASTTV MSSIPPFLSK TYDMVDDPST NDVVSWSSGN NSFVVWNVPE  60
FAKQFLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKQLL KNIVRRKPAQ  120
VQPQQQPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QVTEHHLQNV  180
GQKVHVMEQR QQQMMSFLAK AVQSPGFLNQ FSQQNNDGNQ HISESNKKRR LPVEDQKDTS  240
SHGVNGLSRQ IVRYQSSMNE SANTMLQQIQ NMSNSNSRHE PLSNNHGSFL LGAVPNSNIS  300
DNGSSTSGAS GVTLADVSSN PAKKYYEPGE TNQVLEASLP YSQGDLLAAA ACGSSNSDLV  360
GCETDNGECL DPIMAVLDGS IELEGNAINE LLPGAQDSLW EQFFGERPVI GDTDELISGS  420
VDNELIMEQL ELQSNLRNVL SNNQQMSHLT EQMELLTSDG LRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-272211615120Heat shock factor protein 1
5d5u_B2e-272211624129Heat shock factor protein 1
5d5v_B2e-272211624129Heat shock factor protein 1
5d5v_D2e-272211624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g02050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263650.0BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408356.10.0heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLV4M1170.0V4M117_EUTSA; Uncharacterized protein
STRINGXP_006408356.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]