PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g01860
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 397aa    MW: 44147.5 Da    PI: 7.8798
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g01860genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-114167127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               +++++C+++ rtG C++G++C+F+H++
  Tp3g01860 41 PGEPNCSYYIRTGLCRFGSTCRFNHPR 67
               5789*********************96 PP
2zf-CCCH37.63.7e-1288112327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++++tGtCk+G +CkF+H++
  Tp3g01860  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                799********************96 PP
3zf-CCCH36.49e-12134158327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f+rtG+Ck+G++CkF+H++
  Tp3g01860 134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
                578********************97 PP
4zf-CCCH37.15.2e-12277303127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+f+++tG Ck+G  CkF+H++
  Tp3g01860 277 PGQPECQFYMKTGDCKFGTVCKFHHPR 303
                5789*********************96 PP
5zf-CCCH35.41.8e-11323349127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC f+ r+G+Ck+G++CkF H++
  Tp3g01860 323 PGEPLCVFYTRYGICKFGPSCKFDHPM 349
                589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2674068IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-44067IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-44667IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.13685113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-491112IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549131159IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6134160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22276304IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4282304IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187322350IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8324349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4327347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMNQDA MWQMNLSSDE TMETGSYPER PGEPNCSYYI RTGLCRFGST  60
CRFNHPRDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRSKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGG TCKFNHPQPQ PTTNMMVPTS GQQSYPWSRA  180
SFITSPRWQD PSGFTPLIMP QGVVPVQGWN PYSGQLGSVS PSGTGNEHNN YRNLQQSETK  240
ESGSQSQGSF SGFNSGSSVP LGGFYALPRE NVFPERPGQP ECQFYMKTGD CKFGTVCKFH  300
HPRDRQAPPP DCLLSPIGLP LRPGEPLCVF YTRYGICKFG PSCKFDHPMR VFVYDNTASE  360
TDEVVETSNG QPRRVSVSET RQAATTAGQD STIDTQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g01860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296584.20.0zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A178VJ680.0A0A178VJ68_ARATH; ZFN1
STRINGCagra.1194s0020.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]