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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g01050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | WRKY | ||||||||
Protein Properties | Length: 462aa MW: 50331.7 Da PI: 8.7137 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 7.1e-32 | 198 | 254 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he Tp3g01050 198 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 254 8****************************************.***************8 PP | |||||||
2 | WRKY | 105.1 | 3.6e-33 | 343 | 401 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+ Tp3g01050 343 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 401 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-28 | 189 | 256 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 195 | 256 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-35 | 197 | 255 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.03 | 198 | 256 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 198 | 253 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-36 | 328 | 403 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-29 | 335 | 403 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.734 | 338 | 403 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-38 | 343 | 402 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-25 | 344 | 401 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MALEDDVSSM RTTTLVAPTR PTITVPQRPP AMETTAYFFG GGDGLSLSPG PLSFVSSLFV 60 DHLPDVLTPD NQRTTSFSQL LAGAMSVSPG GGGGRSTAGM FAGGGPMFTI PSGFSPSSLL 120 TSPMFFPPQS QAQTGFVQPQ PQRPDSCPNQ MAPLTSTAVH GRQSFEVSQA DHRTRNHYNN 180 NNSHNRSYNV VNVDKPADDG YNWRKYGQKP IKGCEYPRSY YKCTHVNCPV KKKVERSSDG 240 QITQIIYKGQ HDHERPQNRR GGGGGGRDSG EIGDVRYIGG AGLMMESSDD SGYGKDHDND 300 TDDDDEDLPA SKIRKIDGGV STTHRTVTEP KIIVQTRSEV DLLDDGYRWR KYGQKVVKGN 360 PHPRSYYKCT TANCTVRKHV ERASTDAKAV ITTYEGKHNH DVPAARNGTA AATSATAGSS 420 DHHRMRSMSG NNMQQHMSFG NNTNTGQSPV LLRLKEEKIT TN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-38 | 198 | 404 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-38 | 198 | 404 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g01050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593138 | 0.0 | KM593138.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY28) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015484.1 | 0.0 | probable WRKY transcription factor 58 isoform X2 | ||||
Swissprot | Q93WU7 | 0.0 | WRK58_ARATH; Probable WRKY transcription factor 58 | ||||
TrEMBL | V4M4N4 | 0.0 | V4M4N4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408459.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15670 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01080.1 | 0.0 | WRKY DNA-binding protein 58 |
Publications ? help Back to Top | |||
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