PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g30340
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 296aa    MW: 34470.8 Da    PI: 6.2706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g30340genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.8e-54121382127
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                ppGfrFhPtdeelv +yLkkkv++++++l +vi+e+d+yk+ePwdL++     ++e+kewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v+  +++
  Tp2g30340  12 PPGFRFHPTDEELVGYYLKKKVASQRIDL-DVIREIDLYKIEPWDLQErcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVYL-NSK 109
                9****************************.9***************953432234677**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                l+g++ktLvfy+grap+g+k+dW++hey 
  Tp2g30340 110 LIGMRKTLVFYRGRAPNGQKSDWIIHEYY 138
                ***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-596161IPR003441NAC domain
PROSITE profilePS5100557.3711161IPR003441NAC domain
PfamPF023651.4E-2612137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMKVDQKSSS IPPGFRFHPT DEELVGYYLK KKVASQRIDL DVIREIDLYK IEPWDLQERC  60
RIGYEEQKEW YFFSHKDKKY PTGTRTNRAT VAGFWKATGR DKAVYLNSKL IGMRKTLVFY  120
RGRAPNGQKS DWIIHEYYSL ESHQNAPPQE EGWVVCRAFK KRTTVPTKRR QIWDQNCFFY  180
DATLLEPLDK SIVKRAKHNA DFADTPFKQE LLSEANHIVD VDGDLGSIYL QSIDDDQFSQ  240
LPQLESPSLP SDKLPQSTIS ENSRAGEDDV SDEKMITDWR AFDKFVASQF LMSVED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-501016516169NO APICAL MERISTEM PROTEIN
1ut4_B3e-501016516169NO APICAL MERISTEM PROTEIN
1ut7_A3e-501016516169NO APICAL MERISTEM PROTEIN
1ut7_B3e-501016516169NO APICAL MERISTEM PROTEIN
3swm_A4e-501016519172NAC domain-containing protein 19
3swm_B4e-501016519172NAC domain-containing protein 19
3swm_C4e-501016519172NAC domain-containing protein 19
3swm_D4e-501016519172NAC domain-containing protein 19
3swp_A4e-501016519172NAC domain-containing protein 19
3swp_B4e-501016519172NAC domain-containing protein 19
3swp_C4e-501016519172NAC domain-containing protein 19
3swp_D4e-501016519172NAC domain-containing protein 19
4dul_A3e-501016516169NAC domain-containing protein 19
4dul_B3e-501016516169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00590DAPTransfer from AT5G66300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g30340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382780.0KF738278.1 Brassica napus NAC transcription factor 105 (NAC105.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865078.20.0NAC domain-containing protein 105 isoform X2
SwissprotQ9FH590.0NC105_ARATH; NAC domain-containing protein 105
TrEMBLE5F7230.0E5F723_9BRAS; NAC105
STRINGBostr.0568s0042.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151341619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.10.0NAC domain containing protein 105
Publications ? help Back to Top
  1. Oh DH, et al.
    Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis.
    Plant Physiol., 2010. 154(3): p. 1040-52
    [PMID:20833729]
  2. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]