PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g28210
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 282aa    MW: 31766 Da    PI: 7.6637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g28210genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20110159356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ k++ge
  Tp2g28210 110 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDQAAHKIRGE 159
                9******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-23109166IPR016177DNA-binding domain
PROSITE profilePS5103223.064109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-33109167IPR001471AP2/ERF domain
SMARTSM003801.4E-38109172IPR001471AP2/ERF domain
PRINTSPR003673.1E-11110121IPR001471AP2/ERF domain
CDDcd000181.28E-34110167No hitNo description
PfamPF008472.2E-14110159IPR001471AP2/ERF domain
PRINTSPR003673.1E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNLSLNMSGC IEEFMKALEP FMKVTSTSSS PSSSKPRPPT LSNQNLPVSN QTGPIGLNQL  60
TPTQILQIQT ELHLRQNQAR RRGGGHNLHL LNAKPTPMKK NDVTRPANLY RGVRQRHWGK  120
WVAEIRLPKN RTRLWLGTFE TAEEAALAYD QAAHKIRGEN ARLNFPNIAL RGDYKQTLSP  180
SINAKIESIC NSSGLPLPEL KKPEKTEQGF FGFHYMDPKP DQELEFPDNF GYGSGSSPES  240
DITLLDLPTE WMKEDESFFM GLQKYPSLEI DWDAIEQLSG SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21110166360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g28210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133951e-126AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAY5608581e-126AY560858.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65130) mRNA, complete cds.
GenBankCP0026881e-126CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4471091e-126DQ447109.1 Arabidopsis thaliana clone pENTR221-At5g65130 AP2 domain-containing transcription factor (At5g65130) mRNA, complete cds.
GenBankDQ6533921e-126DQ653392.1 Arabidopsis thaliana clone 0000013473_0000009703 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613888.11e-157PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-134ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A0D2ZR391e-156A0A0D2ZR39_BRAOL; Uncharacterized protein
STRINGBo00790s010.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-108ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]