PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g25190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HSF | ||||||||
Protein Properties | Length: 303aa MW: 34009.1 Da PI: 6.943 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113 | 2e-35 | 27 | 117 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+++++ed++++++isw+e+g+sfvv+++ +fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv ++ weF+++ F++g+k+ll++i+ Tp2g25190 27 FLIKTFNLVEDRSIDDVISWNEDGSSFVVWNPADFARDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFRRGEKRLLREIQ 114 9*****************************************************************99.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Tp2g25190 115 RRK 117 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.0E-37 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.3E-55 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.72E-34 | 24 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.5E-18 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-31 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-18 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-18 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MISPPPSDNG DAMVVTGESQ RSVPTPFLIK TFNLVEDRSI DDVISWNEDG SSFVVWNPAD 60 FARDLLPKHF KHNNFSSFVR QLNTYGFKKV VPDRWEFSND FFRRGEKRLL REIQRRKLTP 120 QPAVAPPPEV VAAQRLQTPK TVVSPSNSGE DQAMSPSSLY CQTGNGGLSV ELLEENEKLR 180 SRNIQLNREL TQMKSLCDNI FNLMSNYAGS PPDRSYYPGA SSSHDAMKPV EFLPEKRFSG 240 ETEVEEEASP RLFGVPIGLK RTRSEGVQVN TAALAEKSSG GGGNKEETPW LRHYNRANER 300 VCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-22 | 27 | 116 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-22 | 27 | 116 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-22 | 27 | 116 | 29 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g25190 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493808 | 3e-95 | AB493808.1 Arabidopsis thaliana At5g62020 mRNA for hypothetical protein, partial cds, clone: RAAt5g62020. | |||
GenBank | AJ251867 | 3e-95 | AJ251867.1 Arabidopsis thaliana mRNA for heat shock factor 6 (hsf6 gene). | |||
GenBank | AK229690 | 3e-95 | AK229690.1 Arabidopsis thaliana mRNA for heat shock factor 6, complete cds, clone: RAFL21-11-D17. | |||
GenBank | BT008542 | 3e-95 | BT008542.1 Arabidopsis thaliana clone U51273 putative heat shock factor 6 (At5g62020) mRNA, complete cds. | |||
GenBank | BT008658 | 3e-95 | BT008658.1 Arabidopsis thaliana clone RAFL21-11-D17 (R51273) putative heat shock factor 6 (At5g62020) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151322.1 | 1e-178 | PREDICTED: heat stress transcription factor B-2a | ||||
Swissprot | Q9SCW4 | 1e-149 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | M4D0Q0 | 1e-176 | M4D0Q0_BRARP; Uncharacterized protein | ||||
STRING | Bra010049.1-P | 1e-177 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 1e-148 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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