PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g22790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 461aa MW: 51934.6 Da PI: 6.8419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.2 | 4.6e-51 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp+GfrF+Ptdeelv +yL+kk+++++ ++ +vi+evdi+k+ePwdLp + vk++++ew fF++ d+ky++g+r nrat +gyWkatgkd++v+s +++ Tp2g22790 9 LPVGFRFSPTDEELVRYYLRKKINRRDDDV-RVIREVDICKWEPWDLPdfSVVKTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATGKDRKVKSGNTK 107 79*************************999.99***************6447888999**************************************99** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+k+tLvfy+grapkg++t W+mheyr+ Tp2g22790 108 IIGVKRTLVFYTGRAPKGVRTCWIMHEYRA 137 ****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-57 | 5 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.048 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002230 | Biological Process | positive regulation of defense response to virus by host | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MEVLSLDSLP VGFRFSPTDE ELVRYYLRKK INRRDDDVRV IREVDICKWE PWDLPDFSVV 60 KTTDSEWLFF CPLDRKYPSG SRMNRATVAG YWKATGKDRK VKSGNTKIIG VKRTLVFYTG 120 RAPKGVRTCW IMHEYRATEK DLDGTKSGQN PFVICKLFKK QDVVNGAAPE DLKSCEVEPA 180 VSSPTIVDDM KSEVELSEVS LAFPKTEETK PSDAAESSLV ISGKCHSENS ALEVATTELN 240 HIDWCSYLEL EPLDCNMFSP LHSQVQSELG SSFNGFPSGS TDLFRNQNGA RIQTQYGSND 300 ADEYMFELLD SALENSYEFP EEKHLAQPTP EQIPYEPQNF VNTSNKINND VSETGIKIRA 360 RRAQTPGCAE QFVMQGNASR RLRLQVNHNS HKSETDNPQV KDTSRGSITK ECGKFMRSKS 420 RTEFVFKKIA AMGCSYSGLF RAGVVAVVFA MSVCTLNAKF R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 9e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 9e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 9e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 9e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 9e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 9e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 9e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-44 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-44 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g22790 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024007342.1 | 0.0 | NAC domain-containing protein 91 isoform X2 | ||||
Swissprot | Q9LKG8 | 0.0 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | V4MKT4 | 0.0 | V4MKT4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394714.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 0.0 | TCV-interacting protein |
Publications ? help Back to Top | |||
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