PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g21820
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 225aa    MW: 24625.4 Da    PI: 6.0197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g21820genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-183585155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Tp2g21820 35 PVYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFSSPEMAARAHDVAALSIKG 85
               68*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-123585IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-313694IPR001471AP2/ERF domain
PROSITE profilePS5103223.4063693IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-213694IPR016177DNA-binding domain
SMARTSM003808.5E-353699IPR001471AP2/ERF domain
PRINTSPR003674.4E-103748IPR001471AP2/ERF domain
CDDcd000185.29E-333795No hitNo description
PRINTSPR003674.4E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MIHLETTSKN SATNSVSQES KGEKTKPVRD SGKHPVYRGV RKRNWGKWVS EIREPRKKSR  60
IWLGTFSSPE MAARAHDVAA LSIKGTSAIL NFPDLAGSFP RPSSLSPRDI QAAALKAAHM  120
EIIMTTSQSS SPSSSFTFSS SQSSSSLESL VYPSSGTCSE ELGEIVELPS LGSSYDGSTQ  180
LGNEFIFSDS TDFWVYPPHQ LSEGDYDMIP CSLSQDWDLP GLFNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1933931172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g21820
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741385.11e-122ethylene-responsive transcription factor TINY
SwissprotQ391271e-106TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A078JMH41e-121A0A078JMH4_BRANA; BnaC09g50850D protein
STRINGBra009862.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-105ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]