PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g18920

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 500aa MW: 54838.2 Da PI: 6.3672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g18920	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	321	368	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Tp2g18920 321 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 368 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.09E-9	315	372	No hit	No description
SuperFamily	SSF47459	2.75E-16	315	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.37	317	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-16	317	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	321	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-10	323	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MDNELFMNTE LPPPPEMPVH FEPPSSSSAM LNWALLDPNL ARNSPPQDCF MWEKSTELQQ 60 QQSIFDSALS SLVSSPTPSS SNFSGGGGDG FIIRELIGKL GNIGNSSGEI YGAPMGNNNG 120 KVSRSGSCYA TPMSSPPPMM NRTTPLTEFS GDPGFAERAA RFSCFGSRSF NGRTNAGLPV 180 NNGKIINSGK LTRVSSTPAL NALVSPEFAS ASRPMIPAGD PTPKLAGEFS RKRKSVSKAK 240 SKENPLSNAS PSPNFSQTAE RKEDWDGKGS KASEEKGAKR RREDEDEEEE EEGNKSNNTK 300 PPEPPKDYIH VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI 360 INYVQSLQRQ VEFLSMKLSS VNDTRLEFNV DALVSKDVMI PSSSKGLHEL QSESLTHHNY 420 NNNSQLHTNI SSNSMMLQSP MNSMETSSLA RSFTHLPTLT QFTDSISQYQ MFSEEDLQSI 480 VGMGVAHNPN HESQNMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MDNELFMNTE LPPPPEMPVH FEPPSSSSAM LNWALLDPNL ARNSPPQDCF MWEKSTELQQ  60
QQSIFDSALS SLVSSPTPSS SNFSGGGGDG FIIRELIGKL GNIGNSSGEI YGAPMGNNNG  120
KVSRSGSCYA TPMSSPPPMM NRTTPLTEFS GDPGFAERAA RFSCFGSRSF NGRTNAGLPV  180
NNGKIINSGK LTRVSSTPAL NALVSPEFAS ASRPMIPAGD PTPKLAGEFS RKRKSVSKAK  240
SKENPLSNAS PSPNFSQTAE RKEDWDGKGS KASEEKGAKR RREDEDEEEE EEGNKSNNTK  300
PPEPPKDYIH VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI  360
INYVQSLQRQ VEFLSMKLSS VNDTRLEFNV DALVSKDVMI PSSSKGLHEL QSESLTHHNY  420
NNNSQLHTNI SSNSMMLQSP MNSMETSSLA RSFTHLPTLT QFTDSISQYQ MFSEEDLQSI  480
VGMGVAHNPN HESQNMKIEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	234	SRKRKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250\|UniProtKB:Q8GY61, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00036	PBM	Transfer from AT5G48560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g18920

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488610	1e-159	AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBank	BT002945	1e-159	BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBank	BT005637	1e-159	BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593916.1	0.0	PREDICTED: transcription factor bHLH78
Refseq	XP_013593917.1	0.0	PREDICTED: transcription factor bHLH78
Swissprot	Q9FJL4	0.0	BH078_ARATH; Transcription factor bHLH78
TrEMBL	A0A0D3DBT1	0.0	A0A0D3DBT1_BRAOL; Uncharacterized protein
STRING	Bo7g089350.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]