PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g13730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 27764.1 Da PI: 9.4242 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7.4e-19 | 6 | 101 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+++++++++l s++l+lp++fa+++ + k + +++l d++g +W + + +g +++tk+W++F+ an+L+ g+++++++++r+++ +++k+ + Tp2g13730 6 FLTITLKHYMLMSRQLRLPRPFARDNRITK--GEKMILVDKHGVKWPSFVASANEQGDFYITKNWNSFCVANELDLGETFTLEFVRREGTIPMLKFSK 101 77888999******************8875..458***************99999999***************************9999988888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-16 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-17 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.9E-22 | 6 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-18 | 6 | 100 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.29E-16 | 6 | 93 | No hit | No description |
PROSITE profile | PS50863 | 13.197 | 6 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKQNNFLTIT LKHYMLMSRQ LRLPRPFARD NRITKGEKMI LVDKHGVKWP SFVASANEQG 60 DFYITKNWNS FCVANELDLG ETFTLEFVRR EGTIPMLKFS KAEVKVNKYN PILVKACVKT 120 YACIKIVKMN CIQIEQTPFH VLQETVDASR DEEEEGQKES ETRIQKRARV SLEGGPSYRT 180 WASDKSSADQ EKSLRSCPIS CQVTKVKQSI VDILTDLRRF QSELVVKQQN LDALLHELMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g13730 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28126 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31620.1 | 4e-57 | B3 family protein |