PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G31620.1 | ||||||||
Common Name | F28M20.190, REM3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 492aa MW: 55712.1 Da PI: 10.0396 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.7 | 4.9e-14 | 20 | 97 | 9 | 93 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ +++l++p +f+++h +gk ++ ++l+l++ s r W+v+l ++++ +++GW +F a+ L++ D++vF+ld ++ f + AT4G31620.1 20 LAGHTSNLIIPDEFFTAHlEGK-TGLTKLKLTSdASDRIWDVRL--NGRR----FAGGWDDFSAAHCLRDDDVLVFRLDVKMVF--H 97 5566778***********6555.67789999987899*******..8887....99*********************9865666..4 PP | |||||||
2 | B3 | 56.7 | 4.3e-18 | 160 | 248 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++l+++r+++ k+f +++g+ k++ ++ l+++sg+sW++ l+++k+ g+ ++++ W++F++an+Lk g f Fkl++ ++++++++++ AT4G31620.1 160 TASNLRLNRVSFTKHFSRANGLTKRCC-MIDLMNLSGESWTLGLRHNKRTGQAFIRGRWRSFCHANELKPGSFYRFKLVR-NGTRPLLQLC 248 6789999****************9886.**************************************************98.6677888877 PP | |||||||
3 | B3 | 71.3 | 1.3e-22 | 286 | 382 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f++v++++++ +sg+l+l ++f++e+g+k++e +++l d++g +W +++ +k++++++++ GW +F++an+Lk+g+++++++++ +++++++k+++ AT4G31620.1 286 FLTVTLKHYMIQSGQLRLRRSFVRENGIKEAE--EIILVDKNGVEWPSYVSSSKQRREFYMAHGWIRFCEANKLKTGETFTLEFVRGEGTTPMLKFCS 381 7889999********************99766..8***************999**999***************************99*********98 PP S CS B3 99 k 99 + AT4G31620.1 382 E 382 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-16 | 7 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-15 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.378 | 12 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.73E-13 | 14 | 99 | No hit | No description |
SMART | SM01019 | 3.9E-18 | 16 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-9 | 18 | 92 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-17 | 147 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.71E-16 | 152 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.1E-24 | 154 | 251 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 154 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-17 | 159 | 248 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.56E-18 | 159 | 248 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-20 | 279 | 382 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-20 | 283 | 381 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.77E-16 | 286 | 373 | No hit | No description |
Pfam | PF02362 | 3.3E-22 | 286 | 382 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.113 | 286 | 382 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-30 | 286 | 383 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MANHPLSSSR SNRPFFVRSL AGHTSNLIIP DEFFTAHLEG KTGLTKLKLT SDASDRIWDV 60 RLNGRRFAGG WDDFSAAHCL RDDDVLVFRL DVKMVFHVTP SGRSFSQIRT SSSSGDYDSD 120 DDDDEAGDDD SDSKNISLKK KSRFEAESSS SEKYCLLGLT ASNLRLNRVS FTKHFSRANG 180 LTKRCCMIDL MNLSGESWTL GLRHNKRTGQ AFIRGRWRSF CHANELKPGS FYRFKLVRNG 240 TRPLLQLCFK VIPQGNCSNS KANGKANVSE KYSREDGSAS TKQNKFLTVT LKHYMIQSGQ 300 LRLRRSFVRE NGIKEAEEII LVDKNGVEWP SYVSSSKQRR EFYMAHGWIR FCEANKLKTG 360 ETFTLEFVRG EGTTPMLKFC SEAKIEQEEA PEERGTPLPK RARVSAEVGH SRRTQAPNKS 420 SDDPKILQRK QPLQPCSFSD QAKKVKQSIV NILTGIKRFR SELELKERNL EAALLEIDAL 480 GDKVSEINKI LK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 253540_at | 3e-37 | ||||
Expression Atlas | AT4G31620 | - | ||||
AtGenExpress | AT4G31620 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G31620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G31620 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY063930 | 0.0 | AY063930.1 Arabidopsis thaliana unknown protein (At4g31620) mRNA, complete cds. | |||
GenBank | AY133753 | 0.0 | AY133753.1 Arabidopsis thaliana clone U18158 unknown protein (At4g31620) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001320106.1 | 0.0 | Transcriptional factor B3 family protein | ||||
Swissprot | Q8VZQ9 | 0.0 | REM3_ARATH; B3 domain-containing protein REM3 | ||||
TrEMBL | A0A384KNK9 | 0.0 | A0A384KNK9_ARATH; Uncharacterized protein | ||||
TrEMBL | G0XQD3 | 0.0 | G0XQD3_ARATH; Transcriptional factor B3 family protein | ||||
STRING | AT4G31620.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9658 | 15 | 37 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT4G31620.1 |
Entrez Gene | 829290 |
iHOP | AT4G31620 |
wikigenes | AT4G31620 |
Publications ? help Back to Top | |||
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