PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g11630

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 499aa MW: 55072.8 Da PI: 6.0541

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g11630	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.3e-10	334	380	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er RR+++N++f Lr ++ + K++Ka+ L A+ YI++L Tp2g11630 334 MNHVEAERLRREKLNQRFYALRAVVRSV-----SKMDKASLLGDAISYINEL 380 5899*********************5.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.2E-51	37	220	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.885	331	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-15	334	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.64E-11	334	381	No hit	No description
Pfam	PF00010	5.8E-8	335	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-14	335	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-12	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005509	Molecular Function	calcium ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MSHKNDNSSM IEALLTSSSS DFWPPLPPAS LSQDNALQKR LQAVLNGTHE AWTYAIFWTP 60 SYYDFSGESV LRWGDGIYKG EEDGKTRRKR KTVAEKEHRT NVLQELSSMI SGEALPVIDD 120 ENDGDDVEMT DTEWFYLVSM TVSFGSGSGL PGKAFATYKP VWVTGSDRII GSGCDRAKQG 180 GDIGLRTIVC IPSDKGVLEL GSTAEIQQTS DLFNKIRVVF SFEGSRDFSG APNPNSSQLF 240 STQLENGNSR TVTGNPNPEV NFSTATSTSA RALSGEILSF RDNINSKSYS DQIQKEDGDL 300 IAAAEKFNDV AALTGNNQKN KRGRKPANSL EGPMNHVEAE RLRREKLNQR FYALRAVVRS 360 VSKMDKASLL GDAISYINEL KSRAENAETE KNAIQIQLNK LREEMAGRNA ISSVCKGEES 420 TTNIDVKIIG CDAIIRLESS KRNHPGARLM NAFMDLEVEV NHASISVIND LMIQQATVKM 480 GLRIYKQEQL RAMLLSKIS

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MSHKNDNSSM IEALLTSSSS DFWPPLPPAS LSQDNALQKR LQAVLNGTHE AWTYAIFWTP  60
SYYDFSGESV LRWGDGIYKG EEDGKTRRKR KTVAEKEHRT NVLQELSSMI SGEALPVIDD  120
ENDGDDVEMT DTEWFYLVSM TVSFGSGSGL PGKAFATYKP VWVTGSDRII GSGCDRAKQG  180
GDIGLRTIVC IPSDKGVLEL GSTAEIQQTS DLFNKIRVVF SFEGSRDFSG APNPNSSQLF  240
STQLENGNSR TVTGNPNPEV NFSTATSTSA RALSGEILSF RDNINSKSYS DQIQKEDGDL  300
IAAAEKFNDV AALTGNNQKN KRGRKPANSL EGPMNHVEAE RLRREKLNQR FYALRAVVRS  360
VSKMDKASLL GDAISYINEL KSRAENAETE KNAIQIQLNK LREEMAGRNA ISSVCKGEES  420
TTNIDVKIIG CDAIIRLESS KRNHPGARLM NAFMDLEVEV NHASISVIND LMIQQATVKM  480
GLRIYKQEQL RAMLLSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	4e-51	34	222	6	194	Transcription factor MYC3
4rqw_B	4e-51	34	222	6	194	Transcription factor MYC3
4rs9_A	4e-51	34	222	6	194	Transcription factor MYC3
4yz6_A	4e-51	34	222	6	194	Transcription factor MYC3
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00547	DAP	Transfer from AT5G46830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g11630

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114323.1	0.0	PREDICTED: transcription factor bHLH28-like
Swissprot	Q9LUK7	0.0	BH028_ARATH; Transcription factor bHLH28
TrEMBL	A0A078J6C3	0.0	A0A078J6C3_BRANA; BnaA09g53560D protein
STRING	Bo01130s010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	0.0	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]