PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g11420
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 295aa    MW: 33656.3 Da    PI: 5.2298
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g11420genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.2e-5261341128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGfrFhPtdeel+++yLk+kveg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g r+nr tk+gyWkatgkd+++++++++
  Tp2g11420   6 LPPGFRFHPTDEELIDYYLKRKVEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCSRDKKYPNGFRTNRGTKAGYWKATGKDRKITCRSSS 104
                79****************************.99**************96435556888****************************************** PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                + g +ktLvfykgrap g +++W+mheyrl
  Tp2g11420 105 TSGYRKTLVFYKGRAPLGDRSSWIMHEYRL 134
                ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-582159IPR003441NAC domain
PROSITE profilePS5100557.3886159IPR003441NAC domain
PfamPF023656.0E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGSSGLPPGF RFHPTDEELI DYYLKRKVEG LEIELEVIPV IDLYKFDPWE LPDKSFLPNR  60
DMEWFFFCSR DKKYPNGFRT NRGTKAGYWK ATGKDRKITC RSSSTSGYRK TLVFYKGRAP  120
LGDRSSWIMH EYRLCDDETS SQGSQNFKGA FVLCRVAKKN EIKTNSKIQR NLSEQTLGSG  180
ESSGYSSRVT SPSRDGPTPF HSFVNPVSTE TNSSNIWISP DFILDSSKDY PQIQDVASEY  240
FQDFDFPVIG NQNVDFPASA LYANIDQNMD ESMQTGYWTN SGYDQTGLFG YSDFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-48616017166NO APICAL MERISTEM PROTEIN
1ut4_B4e-48616017166NO APICAL MERISTEM PROTEIN
1ut7_A4e-48616017166NO APICAL MERISTEM PROTEIN
1ut7_B4e-48616017166NO APICAL MERISTEM PROTEIN
3swm_A4e-48616020169NAC domain-containing protein 19
3swm_B4e-48616020169NAC domain-containing protein 19
3swm_C4e-48616020169NAC domain-containing protein 19
3swm_D4e-48616020169NAC domain-containing protein 19
3swp_A4e-48616020169NAC domain-containing protein 19
3swp_B4e-48616020169NAC domain-containing protein 19
3swp_C4e-48616020169NAC domain-containing protein 19
3swp_D4e-48616020169NAC domain-containing protein 19
4dul_A4e-48616017166NAC domain-containing protein 19
4dul_B4e-48616017166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00546DAPTransfer from AT5G46590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g11420
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128881.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9LS240.0NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A3P6E1T80.0A0A3P6E1T8_BRAOL; Uncharacterized protein
STRINGBra022046.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.10.0NAC domain containing protein 96
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]