PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g08040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NF-YC | ||||||||
Protein Properties | Length: 128aa MW: 14609 Da PI: 10.3667 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.4 | 2.4e-16 | 9 | 88 | 19 | 97 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 e+P++r+kki+k d+d+++i +ea l++ + elf+ l+ +s + a e+kr+t++ + av+r + + dfl+d p Tp2g08040 9 PEFPITRVKKIMKLDKDINKINSEALHLVTYSTELFLHFLAEKSSVVAAEKKRKTVNLDHLRIAVKRHQpTSDFLLDSLP 88 589**************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 6.9E-21 | 10 | 73 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.41E-17 | 11 | 86 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-20 | 11 | 88 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MAEEETIRPE FPITRVKKIM KLDKDINKIN SEALHLVTYS TELFLHFLAE KSSVVAAEKK 60 RKTVNLDHLR IAVKRHQPTS DFLLDSLPLP SSQPVRVAKT VSEKKPPPVG TRRIDDFFNK 120 GKAKAEDF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g08040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797140 | 1e-138 | KC797140.1 Brassica napus transcription factor subunit NF-YC13 (NF-YC13) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403274.2 | 7e-80 | nuclear transcription factor Y subunit gamma | ||||
TrEMBL | V4LQG0 | 1e-78 | V4LQG0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403274.1 | 2e-79 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-56 | nuclear factor Y, subunit C13 |