PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp2g05020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 149aa MW: 17389 Da PI: 8.8876 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.3 | 1.4e-12 | 51 | 96 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ rr ++NRe+A+rsR+RKk + eeL+ +v L +N++Lk++l Tp2g05020 51 RKRRRTMSNRESAKRSRLRKKRRFEELTGEVNRLNLKNQELKNRLA 96 577999************************************8875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-12 | 44 | 97 | No hit | No description |
SMART | SM00338 | 1.1E-11 | 46 | 118 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.772 | 49 | 98 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.52E-9 | 51 | 98 | No hit | No description |
Pfam | PF00170 | 8.8E-10 | 51 | 97 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 54 | 69 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
MFSTNLEPVH ICFDDAMITG DEITEILAFL QSDELENPTG SNELVEPVDE RKRRRTMSNR 60 ESAKRSRLRK KRRFEELTGE VNRLNLKNQE LKNRLANVLS CGNVISRENN RLKTESVCLE 120 IRLLELYRFL VAMQMPISTR LSYITKLSI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 50 | 54 | RKRRR |
2 | 50 | 55 | RKRRRT |
3 | 52 | 72 | RRRTMSNRESAKRSRLRKKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp2g05020 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392278.1 | 9e-79 | basic leucine zipper 4 | ||||
Swissprot | Q9LQ65 | 5e-74 | BZIP4_ARATH; Basic leucine zipper 4 | ||||
TrEMBL | V4KEK9 | 2e-77 | V4KEK9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392278.1 | 3e-78 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12232 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G59530.1 | 2e-68 | basic leucine-zipper 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|