PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G59530.1 | ||||||||
Common Name | ATBZIP4, bZIP4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 148aa MW: 17234.6 Da PI: 8.0399 | ||||||||
Description | basic leucine-zipper 4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39 | 1.7e-12 | 48 | 96 | 3 | 51 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++k+ rr ++NRe+A+rsR +Kk++ eeL+e+v L N++Lk++l + AT1G59530.1 48 DDKKRRRTISNRESAKRSRMKKKKRFEELTEEVNRLNIRNQELKNRLAN 96 589*****************************************77754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.3E-12 | 46 | 117 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.691 | 48 | 97 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.9E-12 | 48 | 96 | No hit | No description |
Pfam | PF00170 | 6.2E-10 | 49 | 96 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.62E-9 | 50 | 97 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MFYTNMETVH NCFNDATITG DEIIDILAFL QSDESDNPSG INEVVPVDDK KRRRTISNRE 60 SAKRSRMKKK KRFEELTEEV NRLNIRNQEL KNRLANVVSC GNFISRENNR LKTESVCLEI 120 RLLELYRFLV AMQSPISTSV NYITTLEI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 71 | RRRTISNRESAKRSRMKKKKR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 257471_at | 0.0 | ||||
Expression Atlas | AT1G59530 | - | ||||
AtGenExpress | AT1G59530 | - | ||||
ATTED-II | AT1G59530 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G59530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G59530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC009317 | 0.0 | AC009317.4 Genomic sequence for Arabidopsis thaliana BAC T30E16 from chromosome I, complete sequence. | |||
GenBank | AC027036 | 0.0 | AC027036.12 Arabidopsis thaliana chromosome 1 BAC T4M14 genomic sequence, complete sequence. | |||
GenBank | AF400619 | 0.0 | AF400619.1 Arabidopsis thaliana transcription factor-like protein bZIP4 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176162.1 | 1e-104 | basic leucine-zipper 4 | ||||
Swissprot | Q9LQ65 | 1e-105 | BZIP4_ARATH; Basic leucine zipper 4 | ||||
TrEMBL | A0A178WN29 | 1e-101 | A0A178WN29_ARATH; BZIP4 | ||||
STRING | AT1G59530.1 | 1e-103 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12232 | 24 | 32 | Representative plant | OGRP11732 | 4 | 6 |
Link Out ? help Back to Top | |
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Phytozome | AT1G59530.1 |
Entrez Gene | 842243 |
iHOP | AT1G59530 |
wikigenes | AT1G59530 |