PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g04700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 21021.2 Da PI: 7.8264 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.2 | 1.3e-38 | 17 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+++Cv+apyf aeq +++fa++hk+FGasn +k+l +lp ++r da+ +l+yeA ar+rdPvyG+vg++++lq+q+++l+aela++++ Tp2g04700 17 PCGACKFLRRKCVRGCVFAPYFDAEQgTARFAAIHKVFGASNTSKMLLRLPLNKRLDAVVTLCYEALARLRDPVYGSVGHLFSLQHQVMNLQAELAHVQA 116 7***********************9989********************************************************************9997 PP DUF260 100 e 100 + Tp2g04700 117 R 117 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.093 | 16 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-37 | 17 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MMTGNLNGGG RGGGERPCGA CKFLRRKCVR GCVFAPYFDA EQGTARFAAI HKVFGASNTS 60 KMLLRLPLNK RLDAVVTLCY EALARLRDPV YGSVGHLFSL QHQVMNLQAE LAHVQARLST 120 FQRFPVQPLF DLAHDNEYTM QPTNLDVVRE EEPLPPQAGI DEDGEFQELT MQFVSKYLPT 180 VKLPACTFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 13 | 115 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 13 | 115 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g04700 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473856 | 1e-129 | AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436454.1 | 6e-97 | PREDICTED: LOB domain-containing protein 19-like | ||||
Refseq | XP_018436455.1 | 6e-97 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 4e-94 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | D7LCJ0 | 2e-94 | D7LCJ0_ARALL; Predicted protein | ||||
TrEMBL | V4KMP1 | 2e-94 | V4KMP1_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.25993s0234.1.p | 5e-97 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 6e-97 | LOB domain-containing protein 19 |