PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g02900
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 393aa    MW: 43096.3 Da    PI: 5.9654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g02900genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-062813191154
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  Tp2g02900 281 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 319
                5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-6280323No hitNo description
Gene3DG3DSA:4.10.280.105.8E-9280332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11280337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071280325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAEEFQATAA ICGSGGGAWW NSPRSVMSPS DHFLSPCFGA AITSDDFVPQ ENNIKSRMTC  60
TDNNILFGQR EADSDSGGST VTIDSTLQMM GLGFSSNSSS DWNQTILQED LNSSFIRSSQ  120
DQDHGQGFLS TTTSPYLLNP ACSSSSSTSS SSSLLRTFYD PEPSPYSFVS ANSCSINDPQ  180
LSWANNKANP HHQAAYGLIN NFSNNTNSRP FWSSSSTTNL NNTTQNSFVT TPQIIPTRIE  240
DKSKSQKTRA QSESLKRAKD NEFAAKKQRV TTPSPLPTFK VRKENLRDQI TSLQQLVSPF  300
GKTDTASVLQ EAIEYIKFLH DQVTVLSTPY MKQGASIQQQ QQISGKSKNQ DGNENQELRA  360
HGLCLVPISS TFPMANETTA DFWTPTFGGN NFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g02900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806490.0AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBankAY1130720.0AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322872.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqNP_564782.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A1J3CDX30.0A0A1J3CDX3_NOCCA; Uncharacterized protein
STRINGAT1G61660.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]