PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g39460

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 298aa MW: 32541.7 Da PI: 8.0542

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g39460	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.5e-53	16	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 lppGfrFhPtdeelv +yLk+k+++++l++ +i++vd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ +++ Tp1g39460 16 LPPGFRFHPTDEELVIHYLKRKADSSPLPV-AIIADVDLYKFDPWELPEKALFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTggGNK 114 79**************************.88***********8888899***********************************988888 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy+g+ pkg+k+dW+mheyrl Tp1g39460 115 KVGVKKALVFYSGKPPKGVKSDWIMHEYRL 144 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-62	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.198	16	170	IPR003441	NAC domain
Pfam	PF02365	6.2E-28	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MESTDSSGGP PPQPNLPPGF RFHPTDEELV IHYLKRKADS SPLPVAIIAD VDLYKFDPWE 60 LPEKALFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVISTG GGNKKVGVKK 120 ALVFYSGKPP KGVKSDWIMH EYRLTDNKPN LICDFGSKKN SLRLCRQIPL SIPGHNVSRM 180 NFFPAIFSGN NDPSAIYDGG GGDGGGGTNY SMNHGFASSS GSKPEQLLSP TMMMKRDIPM 240 PFWEDGNQDP AKRFSGDDVG DCSNIVSSMA APPLMQQQSG VLGEGLVSAS YQLSGLNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-67	15	144	14	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g39460

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974757	1e-157	KF974757.1 Brassica napus NAC transcription factor 18-1 (NAC18-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392856.2	1e-161	NAC domain-containing protein 18
Swissprot	Q9LD44	1e-114	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A1J3C8L7	1e-159	A0A1J3C8L7_NOCCA; NAC domain-containing protein 18 (Fragment)
STRING	Bra018997.1-P	1e-144	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52880.1	1e-111	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]