PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g37890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 388aa MW: 42793.4 Da PI: 6.5923 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.3e-12 | 325 | 370 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + +++L +Av+YIk+Lq Tp1g37890 325 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTSDMLDLAVQYIKDLQ 370 689*********************7....799*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.723 | 319 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-15 | 322 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.32E-11 | 323 | 374 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.4E-15 | 324 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-12 | 325 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-9 | 325 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG DRESIEDFLD RPTSPETERI 60 LSGFLQTTDT SNNVDSFLHH TFTRQNSGGT EKKPLEVKTE EEEEDETEVD VPATAMEVLG 120 GEVEISAATD SVGYASVVRS LGQNKRPREK DDRTPANNLA RHNSSPAGLF SSIDVETAYA 180 AVMKSMGGFG GGNVMNISNT EASSLTPRSK LPPSSASRPM SSIPEIGDVK PSFSSRLPPR 240 TLSGGFNRSF GNEGSASSKL TAISQTQSGG LDQYKTKDED SASRRPPLAH HMSLPKSLSD 300 IEQLLSDSIP CKIRAKRGCA THPRSIAERV RRTKISERMR KLQDLVPNMD TQTNTSDMLD 360 LAVQYIKDLQ EQVKGLEETR ARCRCSST |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g37890 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020869674.1 | 0.0 | transcription factor bHLH122 | ||||
Swissprot | Q9C690 | 0.0 | BH122_ARATH; Transcription factor bHLH122 | ||||
TrEMBL | A0A1J3ES91 | 0.0 | A0A1J3ES91_NOCCA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1J3H6A2 | 0.0 | A0A1J3H6A2_NOCCA; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__4183__AT1G51140.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10547 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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