PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g37850
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family RAV
Protein Properties Length: 359aa    MW: 41099.2 Da    PI: 8.0146
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g37850genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.8e-104794154
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
               ++ykGV +   +g W A+I+       ++r++lg+f +a eAa a++ a  kl+
  Tp1g37850 47 TKYKGVVQQQ-NGHWGAQIYAD-----HRRIWLGTFKSAAEAATAYDSASIKLR 94
               69****9888.8******9993.....4*********************99997 PP
2B3901.8e-28180277183
                EEEE-..-HHHHTT-EE--HHH.HTT................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                f k+ltpsdv+k++rlv+pkk+a +h                g      e+++++++d+  r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF
  Tp1g37850 180 FHKELTPSDVGKLNRLVIPKKYAVKHlpfinddgnereegeiG---GavEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDVIVF 276
                89******************************87666555542...05599************************************************* PP

                E CS
         B3  83 k 83 
                +
  Tp1g37850 277 Y 277
                9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-2247107No hitNo description
SMARTSM003804.4E-1648111IPR001471AP2/ERF domain
PROSITE profilePS5103217.2448105IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1448107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-1648105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.9E-31175278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-27178278IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-25179277No hitNo description
PROSITE profilePS5086312.055180291IPR003340B3 DNA binding domain
PfamPF023622.0E-25180278IPR003340B3 DNA binding domain
SMARTSM010195.9E-20180291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDIYDTSHEA KTTETSGSTD SVLRLAKRMK PTVSTTTKLV LSNTATTKYK GVVQQQNGHW  60
GAQIYADHRR IWLGTFKSAA EAATAYDSAS IKLRSFDANS HRNFPWSEIT VHEPDFQVRH  120
TTEAVLNMIR DGSYQHKFRD HLRLRSQMVA NMNIVGSKQS RGGGGGVQES KKCFSCTELF  180
HKELTPSDVG KLNRLVIPKK YAVKHLPFIN DDGNEREEGE IGGAVEDVEV VFYDRAMRQW  240
KFRYCYWRSS QSFVFTRGWN GFVKEKNLKE KDVIVFYNCD VPSNVNTLEG QSNNFLMIDV  300
DYFSDKGFVA PKEVNKMVHN ISEEEKKTEN FFSSKLEEEE ETKSEENKGG FMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2417927613100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g37850
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393078.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3P6FAH60.0A0A3P6FAH6_BRAOL; Uncharacterized protein
TrEMBLV4KGP00.0V4KGP0_EUTSA; Uncharacterized protein
STRINGBostr.26675s0076.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.10.0RAV family protein