PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g36010
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 332aa    MW: 37718.7 Da    PI: 4.2299
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g36010genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-1684127148
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaia 48 
                sg+kGVr+++ +gr++AeIrd +     r kr +lg+f+t e Aa+a+ +
  Tp1g36010  84 SGIKGVRRRP-WGRFAAEIRDpF-----RkKRKWLGTFDTVEAAAEAYQK 127
                79********.**********76.....45***************99965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-1084125IPR001471AP2/ERF domain
CDDcd000185.73E-1984125No hitNo description
SuperFamilySSF541717.85E-1584131IPR016177DNA-binding domain
PROSITE profilePS5103218.18985142IPR001471AP2/ERF domain
SMARTSM003803.5E-1585139IPR001471AP2/ERF domain
PRINTSPR003674.2E-78697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1887132IPR001471AP2/ERF domain
PRINTSPR003674.2E-7108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVSSHKEENH MTKIIDLSSI KSIRVVCDDP YATESSSEDE AISNNNLRRP TKPKRFVSKI  60
CVATLMERSN SNLEKETGNR KSSSGIKGVR RRPWGRFAAE IRDPFRKKRK WLGTFDTVEA  120
AAEAYQKSKI DFEEQLGQVH QTGLIKQETI DVDLTKTCVS SKSKEKEVED LTKLTNELPL  180
SPPRAFGFGC DDDDGEEGTI SRMLEDPLMT SSISEIFADN VDHNTTEHNP MFDDFKFDNE  240
NDQTESNIKT SFGFKHGNDI EVVENSETEI MMGNILDQWT DFPLELEFDS MIDDLQLSDA  300
LFDDISLDDL EEADDVDSWF NGTIDWIDTS PL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189109RRRPWGRFAAEIRDPFRKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g36010
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393309.11e-99ethylene-responsive transcription factor ERF117
SwissprotQ9M9B24e-84EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLV4JYL33e-98V4JYL3_EUTSA; Uncharacterized protein
STRINGXP_006393309.16e-99(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165471013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.12e-80ERF family protein