PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g34470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 182aa MW: 21124.8 Da PI: 8.4612 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5e-16 | 88 | 134 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+eE+ +++++ ++G+g+Wk I+r+ +Rt+ q+ s+ qky Tp1g34470 88 RNPWTEEEHRRFLEGLDKFGKGDWKNISRMNVRTRTPTQVASHAQKY 134 79***************************9999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.2 | 2 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-12 | 80 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.913 | 83 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-19 | 85 | 140 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-19 | 86 | 137 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-10 | 87 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-13 | 88 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-11 | 90 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MASMYWKRHD DKRFESALAL FTEDYPNRFA TIANHLQIPV ADVMHYYEAL VHDIDLIESD 60 QVVVIDYPDC SGGVSSKTKH VKKDQKRRNP WTEEEHRRFL EGLDKFGKGD WKNISRMNVR 120 TRTPTQVASH AQKYFLRLES KIKKRSSIHD ISPVPDVADN VNVPRSDLDS TMGQPHFGQQ 180 MP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 86 | VKKDQKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g34470 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122731.1 | 2e-77 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_013730893.1 | 2e-77 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 5e-37 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A398AZ51 | 4e-76 | A0A398AZ51_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EZ87 | 4e-76 | M4EZ87_BRARP; Uncharacterized protein | ||||
STRING | Bra034130.1-P | 7e-77 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17289 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09450.1 | 5e-53 | MYB_related family protein |
Publications ? help Back to Top | |||
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