PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g32970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 28651.9 Da PI: 4.2664 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.4 | 2.6e-11 | 69 | 110 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 sg++GV++++ r+++eIrd + + kr ++g+f+t e Aa a+ Tp1g32970 69 SGIRGVWRRP-CERFAVEIRDpF-----QkKRKWIGTFDTVEAAAGAY 110 79****9999.7*********55.....34**********77777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-12 | 69 | 119 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.35E-13 | 69 | 125 | No hit | No description |
Pfam | PF00847 | 1.2E-6 | 69 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.341 | 70 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-6 | 70 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-13 | 72 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVSSIKSVPV VCDDPYATES SSEDEVISSN NTHRPTKPKR YVSKICVGTL MERSNSTLEK 60 VTGNQKSSSG IRGVWRRPCE RFAVEIRDPF QKKRKWIGTF DTVEAAAGAY QRRKIDFEEQ 120 LGQVNQTGSI KQYAIDVDLT KTCVSSKKKE KEVEDLTKSS NDLLFSPPKT FGFGCDDDDG 180 EEGAIARMME DPLMTSSISE IFADNDLWVD PMIDDLQLSD VLFDDITMDD LGEADEVDSW 240 FNATTDWDRY ESFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g32970 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393309.1 | 2e-68 | ethylene-responsive transcription factor ERF117 | ||||
Swissprot | Q9M9B2 | 2e-56 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | V4JYL3 | 5e-67 | V4JYL3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393309.1 | 9e-68 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16547 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 1e-48 | ERF family protein |