PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g30610
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 326aa    MW: 35737.1 Da    PI: 4.9841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g30610genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20153202255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Tp1g30610 153 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 202
                59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-35152212No hitNo description
SMARTSM003804.3E-40153216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32153211IPR001471AP2/ERF domain
PROSITE profilePS5103223.565153210IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-23153211IPR016177DNA-binding domain
PfamPF008479.6E-15154202IPR001471AP2/ERF domain
PRINTSPR003673.0E-11154165IPR001471AP2/ERF domain
PRINTSPR003673.0E-11176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MADFFSSGHG GELMEALQPF YKSVSTSALD SAFTSSNAAF ASAPNDPFSS SSSSYYNPQS  60
QDVSFFSTTQ PDSGSYPDIY SGSMTYPSSF GSDLQQPDQN YQSQQFHYQN DFTYTHQDNN  120
NHCMLNFIDP NPGFVTQAGP VSTSGSVPKP AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  180
GTFDTAEEAA LAYDRAAFKL RGDSARLNFP ALRYQTGSSP SDSGEYYGPI QAAVDAKLEA  240
ILAEPKNQPG KTERTSRKRA KANAASSVEQ PTPQQHSGSG ESDGSGSPTS DMMATEICVE  300
TPMPWNDNFM LGKCPSYEID WASILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21152210160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-21151217369ATERF1
3gcc_A1e-21151217369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g30610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746354.10.0ethylene-responsive transcription factor ERF055-like
SwissprotQ9SKW51e-168ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLA0A078IDT30.0A0A078IDT3_BRANA; BnaAnng09570D protein
TrEMBLA0A397ZID80.0A0A397ZID8_BRACM; Uncharacterized protein
TrEMBLM4FH030.0M4FH03_BRARP; Uncharacterized protein
STRINGBra040381.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-136ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]