PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT1G36060.1 | ||||||||
Common Name | ERF055, F5J5.5, T22A15.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 34307.7 Da PI: 5.6137 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 142 | 191 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g AT1G36060.1 142 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 191 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.64E-36 | 141 | 201 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 142 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-23 | 142 | 200 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-40 | 142 | 205 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.565 | 142 | 199 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-15 | 143 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 143 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 165 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009415 | Biological Process | response to water | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0009046 | anatomy | flower | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MADLFGGGHG GELMEALQPF YKSASTSASN PAFASSNDAF ASAPNDLFSS SSYYNPHASL 60 FPSHSTTSYP DIYSGSMTYP SSFGSDLQQP ENYQSQFHYQ NTITYTHQDN NTCMLNFIEP 120 SQPGFMTQPG PSSGSVSKPA KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL 180 AYDRAAFKLR GDSARLNFPA LRYQTGSSPS DTGEYGPIQA AVDAKLEAIL AEPKNQPGKT 240 ERTSRKRAKA AASSAEQPSA PQQHSGSGES DGSGSPTSDV MVQEMCQEPE MPWNENFMLG 300 KCPSYEIDWA SILS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 141 | 199 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-21 | 140 | 206 | 3 | 69 | ATERF1 |
3gcc_A | 3e-21 | 140 | 206 | 3 | 69 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.39425 | 0.0 | flower| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 263194_at | 0.0 | ||||
Expression Atlas | AT1G36060 | - | ||||
AtGenExpress | AT1G36060 | - | ||||
ATTED-II | AT1G36060 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
|
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00182 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT1G36060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT1G36060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC006228 | 0.0 | AC006228.5 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence. | |||
GenBank | AC021666 | 0.0 | AC021666.5 Arabidopsis thaliana chromosome 1 BAC T22A15 genomic sequence, complete sequence. | |||
GenBank | AK228415 | 0.0 | AK228415.1 Arabidopsis thaliana mRNA for putative AP2 domain containing protein RAP2.4 gi|2281633, complete cds, clone: RAFL14-93-D21. | |||
GenBank | BT005758 | 0.0 | BT005758.1 Arabidopsis thaliana clone RAFL14-93-D21 (R20359) putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds. | |||
GenBank | BT006078 | 0.0 | BT006078.1 Arabidopsis thaliana clone U20359 putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_564468.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9SKW5 | 0.0 | ERF55_ARATH; Ethylene-responsive transcription factor ERF055 | ||||
TrEMBL | A0A178W0X8 | 0.0 | A0A178W0X8_ARATH; Uncharacterized protein | ||||
STRING | AT1G36060.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15124 | 15 | 18 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT1G36060.1 |
Entrez Gene | 840510 |
iHOP | AT1G36060 |
wikigenes | AT1G36060 |