PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G36060.1
Common NameERF055, F5J5.5, T22A15.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 314aa    MW: 34307.7 Da    PI: 5.6137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G36060.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20142191255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  AT1G36060.1 142 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 191
                  59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.64E-36141201No hitNo description
Gene3DG3DSA:3.30.730.101.2E-32142200IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-23142200IPR016177DNA-binding domain
SMARTSM003804.3E-40142205IPR001471AP2/ERF domain
PROSITE profilePS5103223.565142199IPR001471AP2/ERF domain
PfamPF008479.1E-15143191IPR001471AP2/ERF domain
PRINTSPR003672.8E-11143154IPR001471AP2/ERF domain
PRINTSPR003672.8E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0009046anatomyflower
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MADLFGGGHG GELMEALQPF YKSASTSASN PAFASSNDAF ASAPNDLFSS SSYYNPHASL  60
FPSHSTTSYP DIYSGSMTYP SSFGSDLQQP ENYQSQFHYQ NTITYTHQDN NTCMLNFIEP  120
SQPGFMTQPG PSSGSVSKPA KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL  180
AYDRAAFKLR GDSARLNFPA LRYQTGSSPS DTGEYGPIQA AVDAKLEAIL AEPKNQPGKT  240
ERTSRKRAKA AASSAEQPSA PQQHSGSGES DGSGSPTSDV MVQEMCQEPE MPWNENFMLG  300
KCPSYEIDWA SILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21141199160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21140206369ATERF1
3gcc_A3e-21140206369ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.394250.0flower| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible263194_at0.0
Expression AtlasAT1G36060-
AtGenExpressAT1G36060-
ATTED-IIAT1G36060-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. The redox sensitivity of Rap2.4a establishes an efficient switch mechanism for redox control of nuclear gene activity of chloroplast antioxidants, in which Rap2.4 is a redox-sensor and a transducer of redox information. [Rap2.4a]
    [PMID: 18439303]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G36060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G36060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062280.0AC006228.5 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence.
GenBankAC0216660.0AC021666.5 Arabidopsis thaliana chromosome 1 BAC T22A15 genomic sequence, complete sequence.
GenBankAK2284150.0AK228415.1 Arabidopsis thaliana mRNA for putative AP2 domain containing protein RAP2.4 gi|2281633, complete cds, clone: RAFL14-93-D21.
GenBankBT0057580.0BT005758.1 Arabidopsis thaliana clone RAFL14-93-D21 (R20359) putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds.
GenBankBT0060780.0BT006078.1 Arabidopsis thaliana clone U20359 putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564468.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ9SKW50.0ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLA0A178W0X80.0A0A178W0X8_ARATH; Uncharacterized protein
STRINGAT1G36060.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Savaldi-Goldstein S,Aviv D,Davydov O,Fluhr R
    Alternative splicing modulation by a LAMMER kinase impinges on developmental and transcriptome expression.
    Plant Cell, 2003. 15(4): p. 926-38
    [PMID:12671088]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Shaikhali J, et al.
    The redox-sensitive transcription factor Rap2.4a controls nuclear expression of 2-Cys peroxiredoxin A and other chloroplast antioxidant enzymes.
    BMC Plant Biol., 2008. 8: p. 48
    [PMID:18439303]
  6. Sudre D, et al.
    Iron-dependent modifications of the flower transcriptome, proteome, metabolome, and hormonal content in an Arabidopsis ferritin mutant.
    J. Exp. Bot., 2013. 64(10): p. 2665-88
    [PMID:23682113]
  7. Zhu D, et al.
    TRANSLUCENT GREEN, an ERF family transcription factor, controls water balance in Arabidopsis by activating the expression of aquaporin genes.
    Mol Plant, 2014. 7(4): p. 601-15
    [PMID:24177687]
  8. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  9. Okamuro JK,Caster B,Villarroel R,Van Montagu M,Jofuku KD
    The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(13): p. 7076-81
    [PMID:9192694]