PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g29420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 561aa MW: 62589.9 Da PI: 4.5742 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.1 | 3.7e-49 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPtdeelv++yLk+k+ +k+le+ ++i vd+yk+eP++Lp + +k+++++w++F++r++ky++ r+ r t+sgyWkatgkd+ ++ +++ Tp1g29420 17 APGFRFHPTDEELVMYYLKRKIYRKRLEV-NAIGVVDVYKIEPEELPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRCTASGYWKATGKDRVIMY-NSRS 114 69***************************.89**************96347788999**************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vglkktLvfy+grap+ge+tdWvmhey++ Tp1g29420 115 VGLKKTLVFYRGRAPTGERTDWVMHEYTM 143 ***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-55 | 16 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.401 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-25 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MADPSPSSCF KEGKFTAPGF RFHPTDEELV MYYLKRKIYR KRLEVNAIGV VDVYKIEPEE 60 LPGQSVLKTG DRQWFYFTPR SRKYPNAARS GRCTASGYWK ATGKDRVIMY NSRSVGLKKT 120 LVFYRGRAPT GERTDWVMHE YTMNEEELDR CKKVKDYYAL YKLFKKSGAG PKNGEDYGAP 180 FQEEEWVDND SEDPDDIAVP EEPVVRVEDT RRVDNGRLFN PANVQLDDIE EILNGIPYAP 240 GVPQRCINGL ASSIPQVNSE EELQSTLVNN SGREILKPQE IGEFLPNCKP YNSPSGFEST 300 GVTSAPNNSG MEPFVLEKED YIEIDDLLTP DLGASSVEKP AQFLNPDEFG DFNEFDQLFR 360 DVSMFLDMEP NAQGTTADSS SLSNFADFQD QTPENKLNNI MDPSPNLNHF TDDMWFQDDD 420 QNVLFGQPQS ITSGAFASPS SGVMPRSTNL IPSVNAQDQE GENGGGMSPF SSALWAFMDS 480 IPSTPASACE GPINRTFVRM SSFSRIRLSG KANGTPTTTS VVAKKRSRNR GFLLLSIVGA 540 LCAIFWMFIA TVRASGRPVF S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-42 | 18 | 143 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 524 | 529 | KRSRNR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g29420 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592194.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Swissprot | Q9XIC5 | 0.0 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A0D3CRV0 | 0.0 | A0A0D3CRV0_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g044390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 0.0 | NAC domain containing protein 17 |