PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g28530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C3H | ||||||||
Protein Properties | Length: 377aa MW: 39998.2 Da PI: 8.1256 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 92 | 115 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +kt+lC+ f++ GtC+y +C+FaH Tp1g28530 92 FKTKLCCKFRA-GTCPYITNCNFAH 115 69*********.************* PP | |||||||
2 | zf-CCCH | 42.6 | 9.9e-14 | 254 | 279 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Tp1g28530 254 WKTRICNKWEITGYCPFGAKCHFAHG 279 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-13 | 89 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-7 | 89 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0044 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.38 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-5 | 92 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.47 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-7 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.244 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-8 | 173 | 199 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-17 | 249 | 283 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-10 | 249 | 284 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-9 | 253 | 280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 253 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-11 | 254 | 279 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MSHRRDSGGD VVHVIPTNNP PPENWFPNLG DSAVWATEDD YNRVWAVNPD NSSGDNGPPN 60 KKSRGSPSSS SATTTPASAA SNRTKAIGKM FFKTKLCCKF RAGTCPYITN CNFAHTVEEL 120 RRPPPNWQEI VAAHEEERSG TGTTPTTVAA VEQREEFQIP SLVSSTAESG RSFKGRHCKK 180 FYTEEGCPYG ESCTFLHDEA SRNRESVAIS LGPGGYGGGS GGGSAAGGGN SNVVVLGGGG 240 GSGSGIHIVK PSNWKTRICN KWEITGYCPF GAKCHFAHGA AELHRFGGGL VEGEGKDGVS 300 PNPDIKQTGP NLKGHSDTTT LLSPGVPHHA DAGYHSGVAL QRASSAVTQK PGIRTHQKWK 360 GPAKISRIYG DWIDDIE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g28530 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118013 | 0.0 | AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415209.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q9LQM3 | 0.0 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | V4KU70 | 0.0 | V4KU70_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415209.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 0.0 | C3H family protein |