PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g25520

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C3H

Protein Properties

Length: 403aa MW: 49057.7 Da PI: 8.2982

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g25520	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.3e-07	223	243	4	24
---SGGGGTS--TTTTT-SS- CS zf-CCCH 4 elCrffartGtCkyGdrCkFa 24 + C+++++ G+C+yG rC+++ Tp1g25520 223 KDCPHYLKKGWCSYGRRCHYN 243 68*****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.69	219	250	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-4	223	243	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MADARENLQE AQRRRRRRRR SDETESRFIE EIRGRVPDMR PIGLRWRSDE RTDWGYETDS 60 RSWAENREYE YSDPRVNEAG QIRYRKESYA DRREKLQQGR LRDFEMQQWR SHEEESRFLQ 120 QEKREYGYSG SRLNEAVHIR DHNDSYADIR ENLQKHRQRD SEMERISHEK ESRFQQQKRA 180 RTPDWRGSPD WGWSESSRRF DERTQMRHEP AQTSVYPYRP GLKDCPHYLK KGWCSYGRRC 240 HYNYPTHSPP DSKARTPDWR ASESAWRFDE KTQRRQETES IHMPEKMART LPDSQEHASR 300 ERYADTCQSR DGIVAGYKRA QMNLQEEEDA AIERPMRQSQ EDLEIQRWED AENREIRLRL 360 MRRFDQEQED MERQAREAQG NAQEQIRKSL PGRGIERKEG DGF

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MADARENLQE AQRRRRRRRR SDETESRFIE EIRGRVPDMR PIGLRWRSDE RTDWGYETDS  60
RSWAENREYE YSDPRVNEAG QIRYRKESYA DRREKLQQGR LRDFEMQQWR SHEEESRFLQ  120
QEKREYGYSG SRLNEAVHIR DHNDSYADIR ENLQKHRQRD SEMERISHEK ESRFQQQKRA  180
RTPDWRGSPD WGWSESSRRF DERTQMRHEP AQTSVYPYRP GLKDCPHYLK KGWCSYGRRC  240
HYNYPTHSPP DSKARTPDWR ASESAWRFDE KTQRRQETES IHMPEKMART LPDSQEHASR  300
ERYADTCQSR DGIVAGYKRA QMNLQEEEDA AIERPMRQSQ EDLEIQRWED AENREIRLRL  360
MRRFDQEQED MERQAREAQG NAQEQIRKSL PGRGIERKEG DGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	17	QRRRRRR
2	12	19	RRRRRRRR
3	13	19	RRRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g25520

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	V4KRH6	3e-62	V4KRH6_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006415561.1	5e-63	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23411	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29570.1	3e-19	C3H family protein