PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G29570.1
Common NameF15D2.36
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 321aa    MW: 39645.6 Da    PI: 7.0486
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G29570.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-095781226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 + + C+f++++G C+y ++C+F+H+
  AT1G29570.1 57 GKKDCQFYLKNGLCRYRSSCRFNHP 81
                 6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4555583IPR000571Zinc finger, CCCH-type
SMARTSM003560.00145582IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-55783IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-55781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-46181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MADAGDNQQE AERRSDETES RSIKEPKEKE DEDENPQDQI QSKERMRQSS PYPVRPGKKD  60
CQFYLKNGLC RYRSSCRFNH PTQRPQELPV RICKHIMDRN VAEPMYQDWR ESESERRFDE  120
RTQRTFGDER TQRRYGIEYS GARPEKRSKI VPDFQMRDPR HHDTEWRFER ERMERIERQR  180
REAEENLQEQ RQRDSIERQR REAEENLQEQ RQRDSIERQR REAQENLQQQ RQRDSIERQR  240
REAQENLQQQ RLQDMPENHN VDDQQNLQEQ RRISIEKERT EARLRLEQIR PTVSFPINEF  300
IRAVVLLREL IENWDDKAWK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230240RQRDSIERQRR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183971490.0
Genevisible259777_at0.0
Expression AtlasAT1G29570-
AtGenExpressAT1G29570-
ATTED-IIAT1G29570-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G29570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G29570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686676e-66AC068667.6 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence.
GenBankCP0026846e-66CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174250.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9C7P40.0C3H9_ARATH; Putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A178WJQ11e-172A0A178WJQ1_ARATH; Uncharacterized protein
STRINGAT1G29570.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Publications ? help Back to Top
  1. Deleu W, et al.
    Structure of two melon regions reveals high microsynteny with sequenced plant species.
    Mol. Genet. Genomics, 2007. 278(6): p. 611-22
    [PMID:17665215]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]