PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22740
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 290aa    MW: 31933.6 Da    PI: 4.5994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.51.9e-0986122747
        AP2   7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                r ++ +g+WvAeIr p     + ++ +lg++ t+eeA ka+ 
  Tp1g22740  86 RLRR-SGKWVAEIRNPI----SrTKEWLGTYETPEEAGKAYA 122
                5555.8*********72....35888**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.5E-531273IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103214.31581138IPR001471AP2/ERF domain
SMARTSM003801.1E-581141IPR001471AP2/ERF domain
PfamPF008471.6E-482121IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1183128IPR016177DNA-binding domain
CDDcd000183.07E-1483121No hitNo description
Gene3DG3DSA:3.30.730.102.1E-1384125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKKSCMKRGR GNLLRKVRII VSDPYATDDS SGDELFELPN PPKGKRIVHE INLPFNLSEC  60
SQDCHGGLRT SRHKASRQPN KPVGARLRRS GKWVAEIRNP ISRTKEWLGT YETPEEAGKA  120
YADKKVEFDA LAPMGNTLSP SVVSGSSQCF PSPASSSSAS GPCFINGDDL SKEKMSLSKD  180
FAASGDSTEE GFDFSELEIP DLSFLAAEEE STVSSANGAE PDFDWLLMNK DFNHMFDDFS  240
VLDNDINISG ITNSLPSELP DYDFTDVYLN HVDMKFAFAD QLAPLNIAFP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g22740
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415875.11e-109ethylene-responsive transcription factor ERF116
RefseqXP_024008729.11e-109ethylene-responsive transcription factor ERF116
RefseqXP_024008730.11e-109ethylene-responsive transcription factor ERF116
SwissprotQ8GW174e-83EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLV4L3A51e-108V4L3A5_EUTSA; Uncharacterized protein
STRINGXP_006415875.11e-108(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.22e-78ERF family protein