PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G25470.2 | ||||||||
Common Name | CRF12, ERF116, F2J7.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 31991.7 Da PI: 4.5595 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.3 | 3.9e-08 | 82 | 127 | 4 | 53 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 GVr ++ +g+++AeI + + ++ +lg++ t+ eA ka++ + ++ AT1G25470.2 82 VGVRPRP-SGKFAAEILNpF-----TkTKKWLGTYETPAEAEKAYVDKKVEY 127 69**999.7******99955.....3499****************9877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 5.1E-117 | 1 | 276 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SMART | SM00380 | 3.2E-4 | 79 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-12 | 79 | 120 | No hit | No description |
PROSITE profile | PS51032 | 12.536 | 80 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-10 | 82 | 127 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-12 | 83 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MKSFVKPERD SLLRTVRIVF TDPDATDDSS SSSDEWLPKP RKVKRFVHEI TFLPQVSESS 60 QDRSNAVKTP RRKSTRQFKY PVGVRPRPSG KFAAEILNPF TKTKKWLGTY ETPAEAEKAY 120 VDKKVEYDAL ASSGSAVSSS VVTVTSQCLR SPTSASVSCV SADDLSKEKT SLNKDVAASG 180 DSTTKEVFTT FDFSDVKIPD LRFLAAEEDS MVSNANGAEL DFDCFLTDSN ILLDDYSLLE 240 NDINFSRFEN SLPSELPDCD FTEMEFQLDD FKFAYTDHLT TPPLGLV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.41335 | 0.0 | flower| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145336112 | 0.0 | ||||
Genevisible | 255729_at | 0.0 | ||||
Expression Atlas | AT1G25470 | - | ||||
AtGenExpress | AT1G25470 | - | ||||
ATTED-II | AT1G25470 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G25470.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q8GW17 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G25470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079281 | 0.0 | AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence. | |||
GenBank | AK119144 | 0.0 | AK119144.1 Arabidopsis thaliana At1g25470 mRNA for unknown protein, complete cds, clone: RAFL21-49-G19. | |||
GenBank | BT005281 | 0.0 | BT005281.1 Arabidopsis thaliana At1g25470 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173918.2 | 0.0 | AP2 domain-containing transcription factor family protein | ||||
Refseq | NP_973912.1 | 0.0 | AP2 domain-containing transcription factor family protein | ||||
Swissprot | Q8GW17 | 0.0 | EF116_ARATH; Ethylene-responsive transcription factor ERF116 | ||||
TrEMBL | A0A178WDZ8 | 0.0 | A0A178WDZ8_ARATH; Uncharacterized protein | ||||
STRING | AT1G25470.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G25470.2 |
Entrez Gene | 839133 |
iHOP | AT1G25470 |
wikigenes | AT1G25470 |