PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g20300
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 149aa    MW: 16434.1 Da    PI: 6.3461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g20300genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.4e-171262155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s+ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l++
  Tp1g20300 12 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAVAHDVAFYCLHQ 62
               89*****998.**********943...5*********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.06E-271272No hitNo description
SuperFamilySSF541712.94E-171272IPR016177DNA-binding domain
PfamPF008471.6E-81260IPR001471AP2/ERF domain
PROSITE profilePS5103221.3511372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-251372IPR001471AP2/ERF domain
SMARTSM003806.7E-311378IPR001471AP2/ERF domain
PRINTSPR003677.1E-91425IPR001471AP2/ERF domain
PRINTSPR003677.1E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDYRQNSDET RSKYKGIRRR KWGKWVSEIR VPGTRDRLWL GSFSTAEGAA VAHDVAFYCL  60
HQPNSLESLN FPRLLPPSIA SKTSPRSIQQ AASNAGMAVD AGIVHSNGSD LTSGNSGYGD  120
TTAYCENEGE QLEPLNISVY DYLDGHDHV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g20300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553401e-107AC155340.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH020D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416153.19e-92ethylene-responsive transcription factor ERF019
SwissprotO805426e-86ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLV4MRX12e-90V4MRX1_EUTSA; Uncharacterized protein
STRINGXP_006416153.14e-91(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.13e-88ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]