PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp1g19450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26085.6 Da PI: 6.305 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.9e-18 | 44 | 94 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++ a ++l+g Tp1g19450 44 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDVALLCLKG 94 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.2E-20 | 45 | 104 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-11 | 45 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-36 | 45 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 45 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.01 | 45 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 46 | 57 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.02E-27 | 48 | 102 | No hit | No description |
PRINTS | PR00367 | 5.6E-9 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MVKQEPKIQT STKKEISLSS PSHSSSSSSS SSTSRIKNKK NKIKKYKGVR MRSWGSWVSE 60 IRAPNQKTRI WLGSYSTAEA AARAYDVALL CLKGPQANLN FPTSSSSSHH LLDEKTLLSP 120 KSIQRIAAQA ANNSLDLFAP SSSTPSSSAA SSPSDHDQHH DDNDDDGMQS LKDPFVDNHV 180 SLMDPSSSWY DGEHNGMFFF DDGAPFDYSL QLNSTTTNMV DEYFYEDADI PLWSFS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp1g19450 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC013482 | 1e-113 | AC013482.2 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I, complete sequence. | |||
GenBank | AK176679 | 1e-113 | AK176679.1 Arabidopsis thaliana mRNA for TINY like protein, complete cds, clone: RAFL25-22-A03. | |||
GenBank | BT024616 | 1e-113 | BT024616.1 Arabidopsis thaliana At1g21910 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-113 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115658.1 | 1e-109 | PREDICTED: ethylene-responsive transcription factor ERF012-like | ||||
Swissprot | Q9SFE4 | 3e-99 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A078JN64 | 1e-108 | A0A078JN64_BRANA; BnaAnng28960D protein | ||||
TrEMBL | A0A3P5Y4I8 | 1e-108 | A0A3P5Y4I8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F4M2 | 1e-108 | M4F4M2_BRARP; Uncharacterized protein | ||||
STRING | Bra036022.1-P | 1e-108 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2999 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-88 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|