PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g11120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 268aa    MW: 30512.9 Da    PI: 8.1673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g11120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-1475127155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +r++h  +Er+RR+++ s f +Lr +lP      +++K s ++ + +Av+YIk+Lq
  Tp1g11120  75 KRAKHRDIERQRRQEVTSLFKNLRYILPFqY---TKGKRSSSDHVHEAVNYIKDLQ 127
                79***************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-1572149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-1072131No hitNo description
PROSITE profilePS5088813.51674126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1275143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1275127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.006480132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDFAPSSLFT VDFADENELD FSSLITPSTF ISFQEPIPSN PIIHCAGTKN DGRQRICETT  60
MTDKITKEDV EPESKRAKHR DIERQRRQEV TSLFKNLRYI LPFQYTKGKR SSSDHVHEAV  120
NYIKDLQKKI KEVSEKRDRI KRSIIHPSST RECYIRSLAS SWPSPSSLSS YCSCAGDTHI  180
DVKVRACLVG IEIVASCCFR HECCLSSVLQ LLAQEQCLNV VNCISTRVHL RFIHTIVSEV  240
EKGIEVNFSE LRDKIIKIGT FKLSSYGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486KRAKHRDIERQRR
2126141QKKIKEVSEKRDRIKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g11120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885893e-70AF488589.1 Arabidopsis thaliana clone bHLH055 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417224.11e-149transcription factor bHLH55
SwissprotQ9LN951e-127BH055_ARATH; Transcription factor bHLH55
TrEMBLV4KZW81e-148V4KZW8_EUTSA; Uncharacterized protein
STRINGXP_006417224.11e-148(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-122bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]